View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19372_low_20 (Length: 390)

Name: NF19372_low_20
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19372_low_20
NF19372_low_20
[»] chr3 (17 HSPs)
chr3 (18-352)||(1902154-1902489)
chr3 (18-352)||(1911600-1911935)
chr3 (202-352)||(1894916-1895063)
chr3 (202-352)||(2933767-2933914)
chr3 (202-352)||(1904362-1904509)
chr3 (23-189)||(21984307-21984474)
chr3 (31-161)||(54393295-54393428)
chr3 (18-131)||(35864221-35864334)
chr3 (32-117)||(7729824-7729908)
chr3 (18-108)||(11027235-11027325)
chr3 (99-197)||(44441600-44441699)
chr3 (23-141)||(52259713-52259831)
chr3 (33-197)||(10480326-10480493)
chr3 (32-102)||(34962274-34962345)
chr3 (30-102)||(49600729-49600801)
chr3 (32-83)||(31339966-31340017)
chr3 (41-102)||(44111249-44111310)
[»] chr6 (4 HSPs)
chr6 (18-158)||(6822518-6822658)
chr6 (40-139)||(33106823-33106920)
chr6 (34-95)||(18250872-18250933)
chr6 (59-139)||(6901617-6901697)
[»] chr5 (8 HSPs)
chr5 (18-197)||(15726821-15727000)
chr5 (18-197)||(15810665-15810845)
chr5 (23-189)||(29368448-29368615)
chr5 (44-197)||(22399404-22399557)
chr5 (22-88)||(4930660-4930726)
chr5 (48-98)||(17229004-17229054)
chr5 (65-109)||(27343174-27343218)
chr5 (75-117)||(40909995-40910037)
[»] chr8 (9 HSPs)
chr8 (18-149)||(40381594-40381725)
chr8 (30-161)||(37728440-37728571)
chr8 (18-184)||(42164037-42164204)
chr8 (31-193)||(3310494-3310656)
chr8 (106-197)||(1336109-1336201)
chr8 (30-102)||(2537200-2537272)
chr8 (30-139)||(12585655-12585764)
chr8 (35-197)||(16340159-16340319)
chr8 (31-73)||(14539547-14539589)
[»] chr4 (8 HSPs)
chr4 (23-194)||(47552026-47552200)
chr4 (67-161)||(22087819-22087913)
chr4 (99-193)||(26333241-26333336)
chr4 (23-102)||(46732653-46732731)
chr4 (23-141)||(27907223-27907339)
chr4 (18-101)||(24368009-24368092)
chr4 (49-91)||(13035532-13035574)
chr4 (34-100)||(6495746-6495814)
[»] chr1 (11 HSPs)
chr1 (32-197)||(27850394-27850560)
chr1 (18-153)||(30294091-30294226)
chr1 (23-130)||(37244915-37245022)
chr1 (99-197)||(46396620-46396719)
chr1 (96-197)||(1282175-1282277)
chr1 (96-197)||(1283206-1283308)
chr1 (42-102)||(29095842-29095902)
chr1 (35-72)||(42772340-42772377)
chr1 (18-100)||(21487441-21487530)
chr1 (18-59)||(5200333-5200374)
chr1 (21-102)||(31570500-31570581)
[»] chr2 (6 HSPs)
chr2 (18-161)||(28529080-28529223)
chr2 (18-117)||(44718840-44718939)
chr2 (45-117)||(42071417-42071489)
chr2 (18-73)||(42530978-42531033)
chr2 (23-144)||(21490265-21490384)
chr2 (25-102)||(7813549-7813624)
[»] chr7 (4 HSPs)
chr7 (30-188)||(23756630-23756791)
chr7 (30-139)||(22972893-22973002)
chr7 (33-102)||(33758443-33758512)
chr7 (40-97)||(33338293-33338348)
[»] scaffold0245 (1 HSPs)
scaffold0245 (96-197)||(7855-7957)
[»] scaffold0229 (1 HSPs)
scaffold0229 (96-197)||(8183-8285)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 1902154 - 1902489
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1902154 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 1902253  T
Q  118 ggaaaaatcataaaggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatccgtctctgttaatatcaaacata 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  1902254 ggaaaaatcataaaggacaattattattgctataaatttttatatatggtgcacccactattcaaaaatcctggatccttctctgttaatatccaacata 1902353  T
Q  217 gttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacagtaactgtgcagaaagnnnnnnnnntgaagcctgtcaatgctcc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||| ||||||||||    
T  1902354 gttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacggtaactgtgcagaaagaaaaaaaaatgaagcctatcaatgctcc 1902453  T
Q  317 ctcccctctacttgcaaaggttatcttccccaaacc 352  Q
    |||||||||||||||||||||||  |||||||||||    
T  1902454 ctcccctctacttgcaaaggttacattccccaaacc 1902489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 1911600 - 1911935
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1911600 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 1911699  T
Q  118 ggaaaaatcataaaggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatccgtctctgttaatatcaaacata 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  1911700 ggaaaaatcataaaggacaattattattgctataaatttttatatatggtgcacccactattcaaaaatcctggatccttctctgttaatatccaacata 1911799  T
Q  217 gttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacagtaactgtgcagaaagnnnnnnnnntgaagcctgtcaatgctcc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||| ||||||||||    
T  1911800 gttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacggtaactgtgcagaaagaaaaaaaaatgaagcctatcaatgctcc 1911899  T
Q  317 ctcccctctacttgcaaaggttatcttccccaaacc 352  Q
    |||||||||||||||||||||||  |||||||||||    
T  1911900 ctcccctctacttgcaaaggttacattccccaaacc 1911935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 202 - 352
Target Start/End: Original strand, 1894916 - 1895063
Alignment:
Q  202 ttaatatcaaacatagttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacagtaactgtgcagaaagnnnnnnnnntgaa 301  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||  |||||||||          | ||    
T  1894916 ttaatatccaacatagttcatgtcatgatatatatgattatgcacacaaaaactcaaataaaccaagcacggtaagcgtgcagaaa---aaaaaaattaa 1895012  T
Q  302 gcctgtcaatgctccctcccctctacttgcaaaggttatcttccccaaacc 352  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  1895013 gcctatcaatgctccctccccgctacttgcaaaggttatcttccccaaacc 1895063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 202 - 352
Target Start/End: Complemental strand, 2933914 - 2933767
Alignment:
Q  202 ttaatatcaaacatagttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacagtaactgtgcagaaagnnnnnnnnntgaa 301  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||          | ||    
T  2933914 ttaatatccaacatagttcatgtcatgatatatatgattatgcacacaaaaactcaaataaaccaagcacggtaaccgtgcaaaaa---aaaaattttaa 2933818  T
Q  302 gcctgtcaatgctccctcccctctacttgcaaaggttatcttccccaaacc 352  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  2933817 gcctatcaatgctccctccccgctacttgcaaaggttatcttccccaaacc 2933767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 202 - 352
Target Start/End: Original strand, 1904362 - 1904509
Alignment:
Q  202 ttaatatcaaacatagttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacagtaactgtgcagaaagnnnnnnnnntgaa 301  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| ||||  ||||| |||          | ||    
T  1904362 ttaatatccaacatagttcatgtcatgatatatatgattatgcacacaaaaactcaaataaaccaaacacggtaaacgtgcaaaaa---aaaaaaattaa 1904458  T
Q  302 gcctgtcaatgctccctcccctctacttgcaaaggttatcttccccaaacc 352  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  1904459 gcctatcaatgctccctccccgctacttgcaaaggttatcttccccaaacc 1904509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 21984307 - 21984474
Alignment:
Q  23 agatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaa 122  Q
    ||||||| |||||||| ||||||   ||||||||||| ||||| ||| ||| |||||||||||||||||||||| ||||| ||||||| |||||| ||||    
T  21984307 agatgatcggttaaatgattgttcgattatttatataaagaaatatacttttattgatattgaaaatgagaaaaccattcaaagtttcaataatatgaaa 21984406  T
Q  123 aatcataaaggacaattattattgctataaatttttataaatg-tgcacccactattcaaaaatcctg 189  Q
    |||  || ||||||||||||| ||||| ||||||||||| ||| ||| |||| || ||||||||||||    
T  21984407 aattctagaggacaattattaatgctacaaatttttatatatgatgcccccaataatcaaaaatcctg 21984474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 54393295 - 54393428
Alignment:
Q  31 ggttaaatcattgtttagttatttatatagagaaaga---tattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatca 127  Q
    |||||||| |||||||||||||||||||||| |||     | |||| |||||||||||||||||||||||||||| |||||||||||||| ||| ||||     
T  54393295 ggttaaataattgtttagttatttatatagataaaatgtttttttttattgatattgaaaatgagaaaatcattcaaagtttccataatatgaataatcg 54393394  T
Q  128 taaaggacaattattattgctataaatttttata 161  Q
    || ||||||||| ||| ||||| |||||||||||    
T  54393395 tagaggacaatttttaatgctacaaatttttata 54393428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 35864221 - 35864334
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagata-ttttcattgatattgaaaatgagaaaatcattctaagtttccataat 116  Q
    |||| ||||||| |||||||| ||||||||||| |||||||||||||||||| || || ||| |||||||||| | |||||||||  |||||||||||||    
T  35864221 atgagagatgatcggttaaatgattgtttagttgtttatatagagaaagatacttctccttg-tattgaaaataaaaaaatcattgaaagtttccataat 35864319  T
Q  117 aggaaaaatcataaa 131  Q
    | |||||||||||||    
T  35864320 atgaaaaatcataaa 35864334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 7729824 - 7729908
Alignment:
Q  32 gttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 117  Q
    ||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| || |||||||||||    
T  7729824 gttaaatgattgtttaattatttatatagagaaatatatttttattgatattgaaaatgag-aaatcattcaaaatttccataata 7729908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 11027235 - 11027325
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtt 108  Q
    |||| |||||| || |||||| ||| ||||||||||||||||| | |||||||||| ||||||||||||||||| |||||||||| |||||    
T  11027235 atgagagatgactgcttaaataattatttagttatttatatagtgtaagatatttttattgatattgaaaatgataaaatcattcaaagtt 11027325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 44441699 - 44441600
Alignment:
Q  99 attctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatccgtc 197  Q
    |||| ||||||| |||||| ||| |||| || ||||||||||||| | ||| ||||||||||| || ||||  |||||||||||||||||||||||||||    
T  44441699 attcaaagtttcaataatatgaataatcgtagaggacaattattaatactacaaatttttatatatagtgcctccactattcaaaaatcctggatccgtc 44441600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 52259713 - 52259831
Alignment:
Q  23 agatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaa 122  Q
    |||||| ||||||||| ||||||| ||| ||||||| |||  || |||||| ||||||||||| |||||||||||||||| | ||||| | ||||  |||    
T  52259713 agatgactggttaaatgattgtttggttgtttatatggagggaggtatttttattgatattgagaatgagaaaatcattcaatgtttctagaatataaaa 52259812  T
Q  123 aatcataaaggacaattat 141  Q
     ||| || |||||||||||    
T  52259813 catcgtagaggacaattat 52259831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 10480493 - 10480326
Alignment:
Q  33 ttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgag-aaaatcattctaagtttccataata-ggaaaaatcataa 130  Q
    |||||| |||||||||||||||||||||||||| |  |||| |||||||| ||||||| | ||||| |||| |||||| ||||| | | ||||||||||     
T  10480493 ttaaatgattgtttagttatttatatagagaaaaaggttttaattgatatcgaaaatgcgaaaaataattcaaagttttcataaaatgaaaaaatcatag 10480394  T
Q  131 aggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatccgtc 197  Q
    | |  |||||||| |  |  ||||||||||| || ||||  |||||||||||||||| || |||||||    
T  10480393 aagttaattattactatttcaaatttttatatatggtgcctccactattcaaaaatcatgaatccgtc 10480326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 34962345 - 34962274
Alignment:
Q  32 gttaaatcattgtttagttatttatatagagaaagata-ttttcattgatattgaaaatgagaaaatcattc 102  Q
    ||||||| ||||||||||||||||||||||   ||||| |||| |||||||||||||| |||||||||||||    
T  34962345 gttaaatgattgtttagttatttatatagaatgagatactttttattgatattgaaaacgagaaaatcattc 34962274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 49600801 - 49600729
Alignment:
Q  30 tggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattc 102  Q
    |||||| || ||||| |||||| ||||||||| | ||| ||||| ||||| ||||||||||||||||||||||    
T  49600801 tggttagatgattgtctagttacttatatagaaagagagatttttattgagattgaaaatgagaaaatcattc 49600729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 31339966 - 31340017
Alignment:
Q  32 gttaaatcattgtttagttatttatatagagaaagatattttcattgatatt 83  Q
    ||||||| |||||||||||| |||||| |||||||||||||| |||||||||    
T  31339966 gttaaatgattgtttagttaattatattgagaaagatatttttattgatatt 31340017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 44111310 - 44111249
Alignment:
Q  41 ttgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattc 102  Q
    ||||||||||| |||||||||||  |||||||| ||||| || |||||||| ||||| ||||    
T  44111310 ttgtttagttacttatatagagagtgatatttttattgagatcgaaaatgaaaaaattattc 44111249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 6822658 - 6822518
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 117  Q
    |||| ||||||| |||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||||||||  ||||||||| ||||||||||||||    
T  6822658 atgagagatgatcggttaaataattgtttagttatttatataaagaaagaaatttttattgatattgaaaatgaacaaatcattcaaagtttccataata 6822559  T
Q  118 ggaaaaatcataaaggacaattattattgctataaattttt 158  Q
     |||||||  |||||||||||||||| ||||| ||||||||    
T  6822558 tgaaaaattgtaaaggacaattattaatgctacaaattttt 6822518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 33106823 - 33106920
Alignment:
Q  40 attgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaatt 139  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| || ||| |||||||  ||||||| ||||||| ||||    
T  33106823 attgtttagttatttatatagagaaatatatttttattgatattgaaaatgag-aaatcattcaaaatttacataata-taaaaatcgtaaaggataatt 33106920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 18250872 - 18250933
Alignment:
Q  34 taaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaa 95  Q
    ||||| |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||    
T  18250872 taaatgattgtttagttatttatatagagaaaaatatttttattaatattcaaaatgagaaa 18250933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 6901617 - 6901697
Alignment:
Q  59 agagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaatt 139  Q
    ||||| ||| ||||| ||||| |||||||||||||||||||||| |  |||||| |||| || || || || |||||||||    
T  6901617 agagagagagatttttattgagattgaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaatt 6901697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 15727000 - 15726821
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 117  Q
    |||| ||||||| |||||||| |||||||||||||||||||| ||||| ||||||| |||||| || ||||| |||||| ||||| ||||||||||||||    
T  15727000 atgagagatgatcggttaaatgattgtttagttatttatataaagaaatatatttttattgattttcaaaataagaaaaccattcaaagtttccataata 15726901  T
Q  118 ggaaaaatcataaaggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatccgtc 197  Q
     ||||||| ||| ||||||||||||| ||||| |||||||| || || |||| ||||||||| |||||| ||| |||||||    
T  15726900 tgaaaaattatagaggacaattattaatgctacaaatttttttatatggtgc-cccactattaaaaaattctgaatccgtc 15726821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 15810845 - 15810665
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 117  Q
    |||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||| || ||||| |||||| | ||| |||||||| |||||    
T  15810845 atgagagatgatcggttaaatgattgtttagttatttatatagagaaatatatttttattgattttcaaaataagaaaaccgttcaaagtttccgtaata 15810746  T
Q  118 ggaaaaatcataaaggacaattattattgctataaatttttataaatg-tgcacccactattcaaaaatcctggatccgtc 197  Q
     |||||||  || ||||||||||||| ||||| |||||||| || ||| |||  |||||||| ||||||||| ||||||||    
T  15810745 tgaaaaattgtagaggacaattattaatgctacaaatttttttatatgatgcctccactattaaaaaatcctagatccgtc 15810665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 29368615 - 29368448
Alignment:
Q  23 agatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaa 122  Q
    ||||||| |||||||| ||||||   ||||||||||| ||||| ||| ||| |||||||||||||||||||||| ||||| ||||||| |||||| ||||    
T  29368615 agatgatcggttaaatgattgttcgattatttatataaagaaatatacttttattgatattgaaaatgagaaaaccattcaaagtttcaataatatgaaa 29368516  T
Q  123 aatcataaaggacaattattattgctataaatttttataaatg-tgcacccactattcaaaaatcctg 189  Q
    |||  || ||||||||||||| ||||| ||||||||||| ||| ||| |||| || ||||||||||||    
T  29368515 aattctagaggacaattattaatgctacaaatttttatatatgatgcccccaataatcaaaaatcctg 29368448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 22399404 - 22399557
Alignment:
Q  44 tttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattatta 143  Q
    ||||||||||||||| ||||||  | |||  |||||||||||||||||||||||||||  |||||||||||||| ||| |||  || |||||||||| ||    
T  22399404 tttagttatttatat-gagaaatgtttttctattgatattgaaaatgagaaaatcatttaaagtttccataatatgaataattctataggacaattacta 22399502  T
Q  144 ttgctataaatttttataaat-gtgcacccactattcaaaaatcctggatccgtc 197  Q
     ||||| ||||||||||| || |||| ||||||||||||||||||||||||||||    
T  22399503 atgctacaaatttttatatatagtgcgcccactattcaaaaatcctggatccgtc 22399557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 4930726 - 4930660
Alignment:
Q  22 aagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaa 88  Q
    ||||||||  ||||||| ||| |||||||||||||||| ||||| ||||||| ||||||||||||||    
T  4930726 aagatgatcagttaaatgattatttagttatttatataaagaaatatatttttattgatattgaaaa 4930660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 17229004 - 17229054
Alignment:
Q  48 gttatttatatagagaaagatattttcattgatattgaaaatgagaaaatc 98  Q
    |||||||| ||||||||| ||||||| |||||| |||||||||||||||||    
T  17229004 gttatttacatagagaaaaatatttttattgattttgaaaatgagaaaatc 17229054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 27343174 - 27343218
Alignment:
Q  65 agatattttcattgatattgaaaatgagaaaatcattctaagttt 109  Q
    ||||||||| ||||| |||||||||||||||||||||| ||||||    
T  27343174 agatatttttattgacattgaaaatgagaaaatcattcaaagttt 27343218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 40910037 - 40909995
Alignment:
Q  75 attgatattgaaaatgagaaaatcattctaagtttccataata 117  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||    
T  40910037 attgatattgaaaatgagaagatcattcaaagtttctataata 40909995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 40381725 - 40381594
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 117  Q
    |||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| ||||||| ||||||    
T  40381725 atgagagatgatcggttaaatgattgtttagttatttatatagagaaatatatttttattgatattgaaaatgagaaaatctttcaaagtttctataata 40381626  T
Q  118 ggaaaaatcataaaggacaattattattgcta 149  Q
      ||||||| || | ||||||||||| |||||    
T  40381625 taaaaaatcgtagaagacaattattaatgcta 40381594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 37728440 - 37728571
Alignment:
Q  30 tggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcata 129  Q
    ||||||||| || |||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| |||| || |||||||  || | |||||||||    
T  37728440 tggttaaatgatcgtttagttatttatatagagaatgatatttttattgatattgaaaattagaaaattattcaaattttccatggtacggaaaatcata 37728539  T
Q  130 aaggacaattattattgctataaatttttata 161  Q
     || |||||||||| ||||| |||||||||||    
T  37728540 gagaacaattattaatgctacaaatttttata 37728571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 42164037 - 42164204
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 117  Q
    |||| |||| || |||||||| ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| || |||||||||||    
T  42164037 atgagagataatcggttaaatgattgtttagttatttatatagagaaggatatttttattgatattaaaaatgagaaaatcattcaaaatttccataata 42164136  T
Q  118 ggaaaaatcataaaggacaattattattgctataaatttttataaatg-tgcacccactattcaaaaa 184  Q
      ||||||  || | || ||| |||| ||||| ||| ||||||| ||| | | |||||||||||||||    
T  42164137 taaaaaattgtagatgataatcattaatgctacaaaattttatatatgatacccccactattcaaaaa 42164204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 193
Target Start/End: Complemental strand, 3310656 - 3310494
Alignment:
Q  31 ggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataa 130  Q
    ||||||||  ||||||| |||||| ||||| |||| ||||||| | ||||||||||||||| || || |  | |||||||||||||| |||||||  ||     
T  3310656 ggttaaatgtttgtttaattatttgtatagtgaaatatatttttaatgatattgaaaatgataagataac-caaagtttccataatatgaaaaatagtag 3310558  T
Q  131 aggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatc 193  Q
    ||||||||||||| ||||| ||||||| ||| || |||| ||||| |||||||||| |||||||    
T  3310557 aggacaattattaatgctacaaattttcatatatagtgcccccaccattcaaaaattctggatc 3310494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 1336201 - 1336109
Alignment:
Q  106 gtttccataataggaaaaatcataaaggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatccgtc 197  Q
    |||||||||||| ||| ||||||| |||||||||| || ||||| |||||||||||  | |||| ||||||||||||||||||||||||||||    
T  1336201 gtttccataatatgaataatcatagaggacaattactaatgctacaaatttttatatgtagtgcccccactattcaaaaatcctggatccgtc 1336109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 2537272 - 2537200
Alignment:
Q  30 tggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattc 102  Q
    ||||||||| |||||||||||| ||||||||||| |||||||||  ||| |||||||||||||||||||||||    
T  2537272 tggttaaattattgtttagttacttatatagagagagatatttttgttggtattgaaaatgagaaaatcattc 2537200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 12585764 - 12585655
Alignment:
Q  30 tggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcata 129  Q
    ||||||||| ||||| |||||| ||||||||||| ||| ||||| ||||| |||||||||||||||||||||| |  |||||| |||| || || || ||    
T  12585764 tggttaaatgattgtctagttacttatatagagagagagatttttattgagattgaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgta 12585665  T
Q  130 aaggacaatt 139  Q
     |||||||||    
T  12585664 gaggacaatt 12585655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 16340319 - 16340159
Alignment:
Q  35 aaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaagga 134  Q
    |||| |||||||||||||||||| ||||| |  | |||| ||||||||||||||| ||||||||||||  ||||||| ||||| ||| |||  || | ||    
T  16340319 aaatgattgtttagttatttatacagagata--tttttttattgatattgaaaataagaaaatcattcacagtttccgtaatatgaataattgtagaaga 16340222  T
Q  135 caattattattgctataaatttttataaatgtgcacccactattcaaaaatcctggatccgtc 197  Q
    | ||||||| ||||| || ||||| | |  ||||  ||| | |||||||||| ||||||||||    
T  16340221 ctattattaatgctacaatttttttttatagtgcctccattgttcaaaaatcttggatccgtc 16340159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 14539547 - 14539589
Alignment:
Q  31 ggttaaatcattgtttagttatttatatagagaaagatatttt 73  Q
    |||||||| |||||||||||||||||||||| ||| |||||||    
T  14539547 ggttaaatgattgtttagttatttatatagaaaaaaatatttt 14539589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 47552026 - 47552200
Alignment:
Q  23 agatgattggttaaatcattgtttagttatttatatagagaaagatat--tttcattgatattgaaaatgagaaaatcattctaagtttccataatagga 120  Q
    |||||| || |||||| |||||||||||||| ||| |||||||  | |  ||| |||||||||||||||||||||||||||| |||||||||||||| ||    
T  47552026 agatgactgattaaatgattgtttagttattcatacagagaaaagtttctttttattgatattgaaaatgagaaaatcattcaaagtttccataatatga 47552125  T
Q  121 aaaatcataaaggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatcc 194  Q
    | |||| ||||||| ||||| || || || ||||||||||| || |||| ||||||||||||||||| |||||||    
T  47552126 ataatcgtaaaggataattactaatgttacaaatttttatatatagtgctcccactattcaaaaatcatggatcc 47552200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 22087819 - 22087913
Alignment:
Q  67 atattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttata 161  Q
    ||||||| |||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||| |||| ||||||||||| || |||||||||||    
T  22087819 atatttttattgatattgaaaatgcgaaaatcattcaaagttttcataatatgaaaaatcatagaggataattattattgttacaaatttttata 22087913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 26333241 - 26333336
Alignment:
Q  99 attctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatc 193  Q
    |||| |||||||||||||| ||| |||| || ||||||||||||| ||||| ||||||||||| || |||| || |||||||||||||| ||||||    
T  26333241 attcaaagtttccataatatgaataatcgtagaggacaattattaatgctacaaatttttatatatagtgccccgactattcaaaaatcttggatc 26333336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 46732731 - 46732653
Alignment:
Q  23 agatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattc 102  Q
    |||||| ||||||| | |||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||| |||||    
T  46732731 agatgactggttaattgattgtttaattatttatatagaaagagatatttt-attgatattgaaaatgagaaaaacattc 46732653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 27907339 - 27907223
Alignment:
Q  23 agatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaa 122  Q
    |||||| ||||||||  |||||||||||| ||||||||||  |||||||||  ||| |||||||||||| |||||||||| |  ||| || |||| | |     
T  27907339 agatgaatggttaaacaattgtttagttacttatatagag--agatatttttgttggtattgaaaatgaaaaaatcattcaatattttcaaaatatggag 27907242  T
Q  123 aatcataaaggacaattat 141  Q
    |||| ||||||||||||||    
T  27907241 aatcgtaaaggacaattat 27907223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 24368009 - 24368092
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcatt 101  Q
    ||||||||||| || |||| | ||| |||| ||| |||||| ||||  |||||||| ||||| |||||||||||||||||||||    
T  24368009 atgaaagatgaatgattaattaattatttatttacttatattgagagtgatatttttattgacattgaaaatgagaaaatcatt 24368092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 13035574 - 13035532
Alignment:
Q  49 ttatttatatagagaaagatattttcattgatattgaaaatga 91  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||    
T  13035574 ttatttatatagagaaaaatatttttattgatatcgaaaatga 13035532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 6495746 - 6495814
Alignment:
Q  34 taaatcattgtttagttatttatata--gagaaagatattttcattgatattgaaaatgagaaaatcat 100  Q
    ||||| |||||||||||| |||||||  |||| ||||||||| ||||| | | ||||||||||||||||    
T  6495746 taaatgattgtttagttacttatatatagagagagatatttttattgagactaaaaatgagaaaatcat 6495814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 27850560 - 27850394
Alignment:
Q  32 gttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaa 131  Q
    ||||||| ||||||||||||||||||||| |||||| ||||| ||| ||||||||||||| || ||||||| |||||||||||| | ||||||| ||| |    
T  27850560 gttaaatgattgtttagttatttatatagtgaaagacatttttattaatattgaaaatgataatatcattcaaagtttccataaaatgaaaaattataga 27850461  T
Q  132 ggacaattattattgctataaatttttataaatg-tgcacccactattcaaaaatcctggatccgtc 197  Q
    ||| |||||||| | ||| ||||||| ||| ||| ||| | || |||||||||||| ||||||||||    
T  27850460 ggagaattattaatactacaaattttcatatatgatgccctcattattcaaaaatcttggatccgtc 27850394  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 30294226 - 30294091
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 117  Q
    |||| ||||||| |||||||  |||||||||||||||||||| | ||||||||||| |||||| || ||||| |||||| ||||| ||||||||||||||    
T  30294226 atgagagatgatcggttaaaagattgtttagttatttatataaaaaaagatatttttattgattttcaaaataagaaaaccattcaaagtttccataata 30294127  T
Q  118 ggaaaaatcataaaggacaattattattgctataaa 153  Q
     |||||||  || | ||||||||||| || ||||||    
T  30294126 tgaaaaattgtagaagacaattattaatgttataaa 30294091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 37245022 - 37244915
Alignment:
Q  23 agatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaa 122  Q
    |||||||| ||||||| |||||||| |||||||||| |||||  ||||||| |||||||| ||||||| ||||||||||| |||||| ||||| | ||||    
T  37245022 agatgattcgttaaatgattgtttaattatttatattgagaacaatatttttattgatatcgaaaatgtgaaaatcattcaaagttttcataaaatgaaa 37244923  T
Q  123 aatcataa 130  Q
    ||||||||    
T  37244922 aatcataa 37244915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 46396620 - 46396719
Alignment:
Q  99 attctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatccgtc 197  Q
    |||| ||||||| |||||| ||| |||| || ||||||||||||| ||||| ||||||||||| || |||| ||||||||||||||||||||||||||||    
T  46396620 attcaaagtttcaataatatgaataatcgtagaggacaattattaatgctacaaatttttatatatagtgcccccactattcaaaaatcctggatccgtc 46396719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 1282277 - 1282175
Alignment:
Q  96 atcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatcc 194  Q
    ||||||| |||||||||||||| ||| |||  || | ||||||||||| ||||| | ||||||||| || |||| |||||||||||||||||||||||||    
T  1282277 atcattcaaagtttccataatatgaataattgtagatgacaattattaatgctacagatttttatatatagtgcccccactattcaaaaatcctggatcc 1282178  T
Q  195 gtc 197  Q
    |||    
T  1282177 gtc 1282175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 1283308 - 1283206
Alignment:
Q  96 atcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatcc 194  Q
    ||||||| |||||||||||||| ||| |||  || | ||||||||||| ||||| | ||||||||| || |||| |||||||||||||||||||||||||    
T  1283308 atcattcaaagtttccataatatgaataattgtagatgacaattattaatgctacagatttttatatatagtgcccccactattcaaaaatcctggatcc 1283209  T
Q  195 gtc 197  Q
    |||    
T  1283208 gtc 1283206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 29095842 - 29095902
Alignment:
Q  42 tgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattc 102  Q
    |||||||||| ||| |||||||||||| |||| ||||| ||||||||||||||||||||||    
T  29095842 tgtttagttacttacatagagaaagatgtttttattgagattgaaaatgagaaaatcattc 29095902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 42772377 - 42772340
Alignment:
Q  35 aaatcattgtttagttatttatatagagaaagatattt 72  Q
    |||| |||||||||||||||||||||||||||||||||    
T  42772377 aaatgattgtttagttatttatatagagaaagatattt 42772340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 21487441 - 21487530
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatatttt-------cattgatattgaaaatgagaaaatcat 100  Q
    |||| |||||||  ||||||| |||||||| ||||||||||||| ||| |||||||        ||||||||||||||||||||||||||    
T  21487441 atgagagatgatcagttaaatgattgtttaattatttatatagataaaaatattttttattgatattgatattgaaaatgagaaaatcat 21487530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 5200374 - 5200333
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatata 59  Q
    |||| ||||||||| |||||| ||||||||||||||||||||    
T  5200374 atgagagatgattgattaaataattgtttagttatttatata 5200333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 31570500 - 31570581
Alignment:
Q  21 aaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattc 102  Q
    |||||| | ||||||||  ||| |||||||||||||||||||| | |||||||  ||| |||| ||||||| | ||||||||    
T  31570500 aaagataaatggttaaaaaattatttagttatttatatagagagaaatatttttgttgttattaaaaatgaaataatcattc 31570581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 28529080 - 28529223
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 117  Q
    |||| ||||||| ||||| || |||||||||||||||||| ||||||| ||||||| ||||||||||||||||| |||||| ||  ||||||| ||||||    
T  28529080 atgagagatgatcggttacatgattgtttagttatttatacagagaaaaatatttttattgatattgaaaatgataaaatcttttaaagtttctataata 28529179  T
Q  118 ggaaaaatcataaaggacaattattattgctataaatttttata 161  Q
     ||||||||  | || |||||||||| ||||| | |||||||||    
T  28529180 tgaaaaatcggagagaacaattattaatgctacagatttttata 28529223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 44718939 - 44718840
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 117  Q
    |||||| || || |||||||| |||||||||||||||||||||||||||||| ||  | ||||||||||||| |||||||||||  |||||| |||||||    
T  44718939 atgaaaaataatcggttaaatgattgtttagttatttatatagagaaagatacttctactgatattgaaaataagaaaatcattgaaagttttcataata 44718840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 42071489 - 42071417
Alignment:
Q  45 ttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 117  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||  ||||||| ||||||    
T  42071489 ttagttatttatatagataaatatatttttattgatattgaaaatgagaaaatcatttaaagtttcgataata 42071417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 42530978 - 42531033
Alignment:
Q  18 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatatttt 73  Q
    |||| ||||||| |||||||| ||||||||||||||||||||| |||| |||||||    
T  42530978 atgagagatgatcggttaaatgattgtttagttatttatatagtgaaatatatttt 42531033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 21490265 - 21490384
Alignment:
Q  23 agatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaa 122  Q
    |||||| ||||||||| |||||   |||| ||| |||||||   ||||||| ||||||||||||| |||||||||||||| | ||||| | |||| ||||    
T  21490265 agatgaatggttaaatgattgtc--gttacttagatagagatgtatatttttattgatattgaaattgagaaaatcattcaatgtttcaagaatatgaaa 21490362  T
Q  123 aatcataaaggacaattattat 144  Q
    |||| ||||  ||| |||||||    
T  21490363 aatcgtaaacaacacttattat 21490384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 7813549 - 7813624
Alignment:
Q  25 atgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattc 102  Q
    |||| ||||||||  |||||||||||| ||||||||||  |||||| ||  ||| |||| ||||||||||||||||||    
T  7813549 atgaatggttaaacaattgtttagttacttatatagag--agatatatttgttggtatttaaaatgagaaaatcattc 7813624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 23756630 - 23756791
Alignment:
Q  30 tggttaaatcattgtttagttatttatatagagaaagatattttcattgatatt-gaaaatgagaaaatcattctaagtttccataataggaaaaatc-a 127  Q
    ||||||| | || |||||||| |||||||||| ||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||  ||||||| |    
T  23756630 tggttaagtgatcgtttagttgtttatatagaaaaatatatttttattgatatttgaaaatgagaaaatcattcaaagtttccataatataaaaaatcaa 23756729  T
Q  128 taaaggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcct 188  Q
    | |  ||||||||||| ||||| || |||||||| || |||| ||||||||||||| |||||    
T  23756730 ttagagacaattattaatgctacaactttttatatatggtgcccccactattcaaatatcct 23756791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 22972893 - 22973002
Alignment:
Q  30 tggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcata 129  Q
    ||||||||| ||||| |||||| ||||||| ||| ||| ||||| ||||| |||||||||||||||||||||| |  |||||| |||| || || || ||    
T  22972893 tggttaaatgattgtctagttacttatatatagagagagatttttattgagattgaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgta 22972992  T
Q  130 aaggacaatt 139  Q
     |||||||||    
T  22972993 gaggacaatt 22973002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 33758443 - 33758512
Alignment:
Q  33 ttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattc 102  Q
    |||||| |||||||  ||| |||||| ||||| |||||||| ||||| ||||||||||||||||| ||||    
T  33758443 ttaaataattgtttgattacttatattgagaatgatatttttattgacattgaaaatgagaaaattattc 33758512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 33338293 - 33338348
Alignment:
Q  40 attgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaat 97  Q
    |||||||| |||||||||||||  ||  |||||| |||||||||||||||||||||||    
T  33338293 attgtttaattatttatatagaataa--tatttttattgatattgaaaatgagaaaat 33338348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 7957 - 7855
Alignment:
Q  96 atcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatcc 194  Q
    ||||||| |||||||||||||| ||| |||  || | ||||||||||| ||||| | ||||||||| || |||| |||||||||||||||||||||||||    
T  7957 atcattcaaagtttccataatatgaataattgtagatgacaattattaatgctacagatttttatatatagtgcccccactattcaaaaatcctggatcc 7858  T
Q  195 gtc 197  Q
    |||    
T  7857 gtc 7855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 8285 - 8183
Alignment:
Q  96 atcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttataaat-gtgcacccactattcaaaaatcctggatcc 194  Q
    ||||||| |||||||||||||| ||| |||  || | ||||||||||| ||||| | ||||||||| || |||| |||||||||||||||||||||||||    
T  8285 atcattcaaagtttccataatatgaataattgtagatgacaattattaatgctacagatttttatatatagtgcccccactattcaaaaatcctggatcc 8186  T
Q  195 gtc 197  Q
    |||    
T  8185 gtc 8183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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