View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19372_low_21 (Length: 389)

Name: NF19372_low_21
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19372_low_21
NF19372_low_21
[»] chr6 (10 HSPs)
chr6 (18-314)||(1196149-1196445)
chr6 (18-221)||(1185272-1185476)
chr6 (246-312)||(29383673-29383739)
chr6 (246-309)||(31517069-31517132)
chr6 (18-69)||(1180052-1180103)
chr6 (246-309)||(31480725-31480788)
chr6 (246-309)||(10387706-10387769)
chr6 (246-312)||(17457551-17457617)
chr6 (245-283)||(8395470-8395508)
chr6 (237-309)||(11785476-11785549)
[»] chr8 (21 HSPs)
chr8 (246-312)||(3989021-3989087)
chr8 (246-304)||(37032991-37033049)
chr8 (246-306)||(40604592-40604652)
chr8 (244-309)||(21418479-21418544)
chr8 (245-312)||(40102139-40102206)
chr8 (252-312)||(22767246-22767306)
chr8 (246-312)||(40413252-40413318)
chr8 (244-312)||(40713599-40713666)
chr8 (241-312)||(35633853-35633924)
chr8 (246-281)||(42996597-42996632)
chr8 (246-312)||(23258148-23258214)
chr8 (275-312)||(426217-426254)
chr8 (244-312)||(24503033-24503101)
chr8 (246-312)||(11223748-11223814)
chr8 (246-312)||(41344558-41344624)
chr8 (279-312)||(26507825-26507858)
chr8 (245-309)||(38779138-38779203)
chr8 (246-286)||(16036709-16036749)
chr8 (241-312)||(21648814-21648886)
chr8 (276-312)||(27836296-27836332)
chr8 (273-309)||(42047454-42047490)
[»] chr3 (35 HSPs)
chr3 (246-312)||(24551116-24551182)
chr3 (245-312)||(37302962-37303029)
chr3 (241-312)||(39604130-39604201)
chr3 (245-312)||(26280000-26280066)
chr3 (241-312)||(28269922-28269993)
chr3 (245-312)||(42475865-42475932)
chr3 (243-312)||(3483235-3483304)
chr3 (247-312)||(32536857-32536921)
chr3 (247-312)||(55195463-55195527)
chr3 (241-312)||(33007476-33007548)
chr3 (254-312)||(37215128-37215186)
chr3 (246-312)||(37303499-37303565)
chr3 (245-309)||(35272146-35272211)
chr3 (245-312)||(8066471-8066537)
chr3 (245-312)||(29706019-29706086)
chr3 (245-312)||(48649697-48649764)
chr3 (246-312)||(39540351-39540417)
chr3 (255-312)||(11173566-11173623)
chr3 (247-312)||(30839573-30839638)
chr3 (247-312)||(5350418-5350485)
chr3 (245-312)||(28300534-28300601)
chr3 (32-71)||(52128905-52128944)
chr3 (32-71)||(52129274-52129313)
chr3 (246-312)||(7231895-7231961)
chr3 (246-312)||(20380778-20380844)
chr3 (246-312)||(46473244-46473310)
chr3 (255-309)||(47723230-47723284)
chr3 (275-312)||(5188352-5188389)
chr3 (246-283)||(9099468-9099505)
chr3 (244-281)||(22813206-22813243)
chr3 (243-312)||(41957629-41957698)
chr3 (255-312)||(48945963-48946020)
chr3 (246-309)||(31997921-31997985)
chr3 (284-312)||(32687887-32687915)
chr3 (246-312)||(41877498-41877566)
[»] chr2 (25 HSPs)
chr2 (242-312)||(1889263-1889333)
chr2 (246-312)||(23045277-23045343)
chr2 (245-312)||(18917740-18917807)
chr2 (249-312)||(6639364-6639427)
chr2 (245-312)||(19695580-19695646)
chr2 (246-312)||(13104595-13104661)
chr2 (246-312)||(32750114-32750180)
chr2 (246-312)||(3091857-3091923)
chr2 (246-312)||(7086013-7086079)
chr2 (246-304)||(15901894-15901952)
chr2 (246-312)||(31296732-31296798)
chr2 (246-312)||(42251809-42251875)
chr2 (246-307)||(1876241-1876302)
chr2 (243-312)||(23880211-23880280)
chr2 (246-312)||(34249696-34249763)
chr2 (250-312)||(25801704-25801766)
chr2 (244-312)||(14714102-14714170)
chr2 (245-312)||(14140227-14140294)
chr2 (245-312)||(23344877-23344944)
chr2 (246-309)||(43650436-43650499)
chr2 (246-309)||(43665742-43665804)
chr2 (246-312)||(11164265-11164331)
chr2 (246-312)||(36133090-36133156)
chr2 (275-312)||(12600164-12600201)
chr2 (275-312)||(13711177-13711214)
[»] chr4 (29 HSPs)
chr4 (245-312)||(35580226-35580293)
chr4 (241-312)||(24337240-24337311)
chr4 (246-312)||(51717173-51717239)
chr4 (246-312)||(25523085-25523151)
chr4 (247-309)||(5123480-5123542)
chr4 (244-312)||(38844377-38844445)
chr4 (246-309)||(37726945-37727006)
chr4 (241-312)||(28480422-28480493)
chr4 (254-312)||(52891748-52891809)
chr4 (246-312)||(31275262-31275328)
chr4 (246-312)||(37547151-37547217)
chr4 (246-312)||(42915108-42915174)
chr4 (246-312)||(47998710-47998775)
chr4 (250-312)||(51389432-51389494)
chr4 (246-300)||(54251349-54251403)
chr4 (247-312)||(29384087-29384152)
chr4 (245-290)||(35198862-35198907)
chr4 (246-287)||(39684766-39684807)
chr4 (245-312)||(38160660-38160728)
chr4 (245-281)||(46794403-46794439)
chr4 (245-309)||(53583016-53583080)
chr4 (246-309)||(10994042-10994105)
chr4 (245-312)||(28481300-28481367)
chr4 (245-312)||(28482175-28482242)
chr4 (246-281)||(41119427-41119462)
chr4 (247-312)||(34116429-34116495)
chr4 (246-312)||(36444284-36444350)
chr4 (245-309)||(5234359-5234423)
chr4 (244-312)||(15596512-15596580)
[»] chr5 (19 HSPs)
chr5 (246-312)||(19376021-19376087)
chr5 (246-312)||(27392591-27392657)
chr5 (243-312)||(39595390-39595459)
chr5 (241-312)||(125208-125279)
chr5 (245-312)||(11666295-11666362)
chr5 (245-312)||(24431506-24431573)
chr5 (246-312)||(20719904-20719970)
chr5 (257-309)||(29402301-29402353)
chr5 (246-281)||(471949-471984)
chr5 (246-293)||(33393694-33393741)
chr5 (246-312)||(33909976-33910043)
chr5 (246-312)||(2117529-2117595)
chr5 (246-312)||(11306812-11306878)
chr5 (243-308)||(16202840-16202906)
chr5 (246-312)||(33567128-33567194)
chr5 (271-312)||(4834943-4834984)
chr5 (245-278)||(6529160-6529193)
chr5 (244-281)||(42909854-42909891)
chr5 (245-309)||(9714023-9714087)
[»] chr7 (17 HSPs)
chr7 (244-312)||(28824619-28824687)
chr7 (245-312)||(26153776-26153843)
chr7 (246-312)||(19510246-19510312)
chr7 (243-312)||(2790293-2790363)
chr7 (242-308)||(10591272-10591338)
chr7 (246-312)||(33684796-33684862)
chr7 (244-312)||(5198646-5198715)
chr7 (245-312)||(21752774-21752841)
chr7 (246-312)||(5978695-5978761)
chr7 (241-309)||(45432062-45432131)
chr7 (245-312)||(12142000-12142067)
chr7 (245-312)||(21858863-21858930)
chr7 (32-71)||(24761470-24761509)
chr7 (32-71)||(24761839-24761878)
chr7 (246-309)||(37351879-37351942)
chr7 (246-312)||(38995912-38995978)
chr7 (246-312)||(46651788-46651854)
[»] chr1 (18 HSPs)
chr1 (246-312)||(366773-366839)
chr1 (246-312)||(39010930-39010996)
chr1 (246-312)||(50659081-50659147)
chr1 (249-312)||(45042377-45042439)
chr1 (244-312)||(36690459-36690527)
chr1 (244-312)||(36706560-36706628)
chr1 (246-312)||(28253131-28253197)
chr1 (250-312)||(47015201-47015263)
chr1 (248-313)||(1615152-1615217)
chr1 (244-312)||(40610345-40610413)
chr1 (246-312)||(31378597-31378664)
chr1 (250-312)||(34187380-34187442)
chr1 (246-305)||(50226768-50226828)
chr1 (246-309)||(52233125-52233189)
chr1 (249-312)||(50141827-50141890)
chr1 (246-304)||(31436942-31437000)
chr1 (276-312)||(22389444-22389480)
chr1 (249-312)||(25302536-25302600)
[»] scaffold0154 (1 HSPs)
scaffold0154 (245-312)||(9736-9803)
[»] scaffold0501 (1 HSPs)
scaffold0501 (245-312)||(10404-10471)
[»] scaffold0148 (1 HSPs)
scaffold0148 (243-309)||(9570-9636)
[»] scaffold0002 (1 HSPs)
scaffold0002 (271-312)||(6543-6584)


Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 1196445 - 1196149
Alignment:
18 cagacacgataggtgatcttcctcaagctccatttatgctctgaaatcaacaacataaaagactgttgaattgagcaatattttatatcgtgaatgtagg 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
1196445 cagacacgataggtgatcttcctcaagctccatttatgttctgaaatcaacaacataaaagactgttgaattgggcaatattttatatcgtgaatgtagg 1196346  T
118 taaatcaaaatcttaaatatatatatcaaaatagacctagtcttctgaaacccttaaaagtcctcttccgaaacagaccatgaagaatttcgtagttatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1196345 taaatcaaaatcttaaatatatatatcaaaatagacctagtcttctgaaacccttaaaagtcctcttccgaaacagaccatgaagaatttcgtagttatg 1196246  T
218 tataaattttaaagtggtctttgtttttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcatat 314  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1196245 tataaatttcaaagtggtctttgtttttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcatat 1196149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 1185476 - 1185272
Alignment:
18 cagacacgataggtgatcttcctcaagctccatttatgctctgaaatcaacaacataaaagactgttgaattgagcaatattttatatcgtgaatgtagg 117  Q
    ||||| |||||| ||||||||| ||||||||||||||| ||||||||||| |||||||| ||||||||||||| | ||||| ||||||| ||||||||||    
1185476 cagactcgatagttgatcttccacaagctccatttatgttctgaaatcaaaaacataaatgactgttgaattgggaaatatcttatatcttgaatgtagg 1185377  T
118 taaatcaaaatcttaaatatatatatcaaaatagacctagtcttctgaaacccttaaaagtcctcttccgaaacagacc---atgaagaatttcgtagtt 214  Q
    ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||   || | ||||||| |||||    
1185376 taaatcaaaatcttaaatat--atatcaaaatagacctagtcttttgaaacccttaaaagtcctcttccgaaacggaccgtaattaggaatttcatagtt 1185279  T
215 atgtata 221  Q
    |||||||    
1185278 atgtata 1185272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 29383739 - 29383673
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||    
29383739 gagtagtgttatttgaacaagcaaatgagacaatttatgtgacaacttcttttttctctcttttcat 29383673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 31517069 - 31517132
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||    
31517069 gagtagtgttatttgaacaactaaatgagacaacttatgtgacaacttcttttttctctctttt 31517132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 1180103 - 1180052
Alignment:
18 cagacacgataggtgatcttcctcaagctccatttatgctctgaaatcaaca 69  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
1180103 cagacacgataggtgatcttcctcaagctccatttatgttctgaaatcaaca 1180052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 31480725 - 31480788
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    ||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||||||||||    
31480725 gagtagtgttatttgaacaactaaatgagacaatttatgtgacaacttcttttttctctctttt 31480788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 10387706 - 10387769
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    ||||| ||||||||||||||||| |||||| ||||| |||||||| ||||||||||| ||||||    
10387706 gagtaatgttatttgaacaatcatatgagataacttttgtgataatttcttttttctatctttt 10387769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 17457617 - 17457551
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||||||||||||||| ||||||||||| |||| ||| || |||||||| | |||||||    
17457617 gagtagtgatatttgaacaatcaattgagacaacttttgtggtaattttttttttcttttttttcat 17457551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 8395508 - 8395470
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttat 283  Q
    |||||||||||||||||||||||| ||||||||| ||||    
8395508 tgagtagtgttatttgaacaatcatatgagacaatttat 8395470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 11785549 - 11785476
Alignment:
237 tttgtttttgagtagtgttatttgaacaa-tcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    |||||| | |||||||| ||||||||||| |||  | ||||||||||||||| ||||| |||||||||| ||||    
11785549 tttgttatagagtagtgatatttgaacaactcattttagacaacttatgtgacaacttgttttttctctttttt 11785476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 3989087 - 3989021
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
3989087 gagtagtgttatttgaacaaccaaatgagacaacttatgtgacaacttcttttttctctcttttcat 3989021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 37032991 - 37033049
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctct 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
37032991 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttttttttcctct 37033049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 40604592 - 40604652
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctct 306  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||    
40604592 gagtagtgttatttgaacaaccaaatgagacaatttatgtgataatttcttttttctctct 40604652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 21418479 - 21418544
Alignment:
244 ttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||||| ||||||    
21418479 ttgagtagtgttatttgaacaactaaatgagacaacttatgtgacaacttattttttctatctttt 21418544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 40102206 - 40102139
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||| || |||||||||||| ||||| ||||| |||| |||||||||||||    
40102206 tgagtagtgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctcttttcat 40102139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 22767306 - 22767246
Alignment:
252 tgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||| |  |||||||||||| ||||| ||||||||||||||||||||||||    
22767306 tgttatttgaacaaccgtatgagacaacttttgtgacaacttcttttttctctcttttcat 22767246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 40413252 - 40413318
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||||||||||| ||  ||| ||||||| | ||||||||||||||||||||||||||||    
40413252 gagtagtgatatttgaacaaccatttgatacaacttttatgataacttcttttttctctcttttcat 40413318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 40713599 - 40713666
Alignment:
244 ttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||| ||||||||||||||  |||||||| ||||| |||||||| |||||| |||||||||||    
40713599 ttgagtagtgatatttgaacaatcatgtgagacaatttatgcgataactt-ttttttatctcttttcat 40713666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 35633853 - 35633924
Alignment:
241 tttttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| ||||||||||||||| ||||||||| ||||||||||| || || | ||| |||| |||||||    
35633853 tttttgagttgtgttatttgaacaaccaaatgagataacttatgtgacaatttttgtttcctcttttttcat 35633924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 42996632 - 42996597
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaactt 281  Q
    ||||||||||||||||||||||||||||||||||||    
42996632 gagtagtgttatttgaacaatcaaatgagacaactt 42996597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 23258214 - 23258148
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||||||||||| ||  ||| |||| || ||||| ||||||||||||||||||||||||    
23258214 gagtagtgatatttgaacaaccatttgaaacaatttttgtgacaacttcttttttctctcttttcat 23258148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 426254 - 426217
Alignment:
275 acaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||| ||||||||||||||||||||||||    
426254 acaacttatgtgacaacttcttttttctctcttttcat 426217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 24503101 - 24503033
Alignment:
244 ttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||| |||||||||||||| || ||  ||||||||||| | ||| |||||| |||||||||||||||||    
24503101 ttgattagtgttatttgaataaccatttgagacaacttttatgacaacttcatttttctctcttttcat 24503033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 11223748 - 11223814
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| |||||||||||||   ||||||||||| ||  | ||||||||||||||| ||||||||    
11223748 gagtagtgatatttgaacaatcttttgagacaacttttggtacaacttcttttttctcacttttcat 11223814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 41344558 - 41344624
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||||||||||  ||  ||||||||||  | |||||||||||||| |||||||||||||    
41344558 gagtagtgatatttgaacatccatttgagacaactcttatgataacttcttttctctctcttttcat 41344624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 26507825 - 26507858
Alignment:
279 cttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| ||||||||||||||||||||||||    
26507825 cttatgtgacaacttcttttttctctcttttcat 26507858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 38779203 - 38779138
Alignment:
245 tgagtagtgttatttgaacaa-tcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    ||||||||| ||||||||||| |||  | |||||| |||||||| |||||||||||||||| ||||    
38779203 tgagtagtgatatttgaacaactcattttagacaatttatgtgacaacttcttttttctctatttt 38779138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 16036749 - 16036709
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtg 286  Q
    |||| ||||||||||||||| |||||||||||| |||||||    
16036749 gagtcgtgttatttgaacaaccaaatgagacaatttatgtg 16036709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 21648814 - 21648886
Alignment:
241 tttttgagtagtgttatttgaacaatcaaatgagacaacttat-gtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||| ||||| ||||| ||  ||||||||||| | |||| ||||| |||| |||||||||||||    
21648814 tttttgagtagtgatattttaacaaccatttgagacaacttttggtgacaacttattttctctctcttttcat 21648886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 27836332 - 27836296
Alignment:
276 caacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||| |||||||||| |||||||||||||    
27836332 caacttatgtgacaacttcttttctctctcttttcat 27836296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 42047490 - 42047454
Alignment:
273 agacaacttatgtgataacttcttttttctctctttt 309  Q
    |||||| |||||||| |||||||||||||||||||||    
42047490 agacaatttatgtgacaacttcttttttctctctttt 42047454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 24551116 - 24551182
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
24551116 gagtagtgttatttgaacaatcaaatgagacaatttatgtgacaacttcttttttctctcttttcat 24551182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 37302962 - 37303029
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||| || |||||||||||| ||||| || |||||||||||||||||||||    
37302962 tgagtagtgttatttgaacaagcatatgagacaacttttgtgacaatttcttttttctctcttttcat 37303029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 39604130 - 39604201
Alignment:
241 tttttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||| |||||||||||||||||||  |||||||| ||||||| ||| ||||||||||||||||||||||||    
39604130 ttttttagtagtgttatttgaacaactaaatgagataacttatttgacaacttcttttttctctcttttcat 39604201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 26280066 - 26280000
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||||||||||||    
26280066 tgagtagtgttatttgaacaatcaaatgagataacttatgtgacaa-ttttttttcctctcttttcat 26280000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 28269993 - 28269922
Alignment:
241 tttttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||| ||||||||||||||||||| || |||||||||||| || || |||||||||||||| |||||||||    
28269993 ttttttagtagtgttatttgaacaaccatatgagacaacttttgcgacaacttcttttttctatcttttcat 28269922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 42475865 - 42475932
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||| || || ||||||||| ||||| ||||| ||||||||||||||||||    
42475865 tgagtagtgttatttgaacaaccatataagacaacttttgtgaaaacttattttttctctcttttcat 42475932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 3483304 - 3483235
Alignment:
243 tttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||||||||  ||| ||||| | ||||| ||||| ||||||||||||||||||    
3483304 tttgagtagtgttatttgaacaatcatttgatacaacatctgtgacaactttttttttctctcttttcat 3483235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 32536921 - 32536857
Alignment:
247 agtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||||| |||| |||||||||||||    
32536921 agtagtgttatttgaacaattaaatgatacaacttatgtgacaactt-ttttctctctcttttcat 32536857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 55195527 - 55195463
Alignment:
247 agtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||||||||||||||| |||||||| || || ||||| ||||||||||||    
55195527 agtagtgttatttgaacaatcaaatgagacaatttatgtgacaa-ttttttttcctctcttttcat 55195463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 33007548 - 33007476
Alignment:
241 tttttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttctt-ttttctctcttttcat 312  Q
    |||| |||||||||||||||||||| || ||||||||| || ||||| |||||||| ||||||||||||||||    
33007548 ttttcgagtagtgttatttgaacaaccatatgagacaatttttgtgacaacttctttttttctctcttttcat 33007476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 37215128 - 37215186
Alignment:
254 ttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||| || |||||||||||| ||||| ||||| ||||||||||||||||||    
37215128 ttatttgaacaaccatatgagacaacttttgtgacaacttattttttctctcttttcat 37215186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 37303565 - 37303499
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||  | |||||||||||| ||||| || || ||||||||||||||||||    
37303565 gagtagtgttatttgaacaactatatgagacaacttttgtgacaatttattttttctctcttttcat 37303499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 35272211 - 35272146
Alignment:
245 tgagtagtgttatttgaacaat-caaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    ||||||||| |||||||||||| ||  | ||||||||||||||| |||||||||||||||||||||    
35272211 tgagtagtgatatttgaacaattcattttagacaacttatgtgacaacttcttttttctctctttt 35272146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 8066537 - 8066471
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||| |||||||| |||||||||||  ||||| |||||  |||||||||||||||||    
8066537 tgagtagtgttatttaaacaatcatatgagacaactattgtgacaactt-atttttctctcttttcat 8066471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 29706086 - 29706019
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| |||||||||||  |  ||| ||||||| ||||| ||||||||||||||||||||||||    
29706086 tgagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcat 29706019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 48649764 - 48649697
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||| || |||||| || || ||||||||||| |||| ||||| |||||||    
48649764 tgagtagtgttatttgaacaaccatatgagataatttttgtgataacttattttctctcttttttcat 48649697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 39540417 - 39540351
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||| ||||||||||||||| || |||||| || || |||||||| || ||||||||||||||||||    
39540417 gagttgtgttatttgaacaaccatatgagataatttttgtgataatttattttttctctcttttcat 39540351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 11173623 - 11173566
Alignment:
255 tatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||| ||  ||| ||||||| ||||| ||||||||||||||||||||||||    
11173623 tatttgaacaaccatttgatacaacttttgtgacaacttcttttttctctcttttcat 11173566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 30839638 - 30839573
Alignment:
247 agtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||| ||||| |||||||| |||| ||||||  ||||| ||||||| ||||||||||||||||    
30839638 agtagtgatatttaaacaatcatatgatacaactcttgtgacaacttctattttctctcttttcat 30839573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 5350485 - 5350418
Alignment:
247 agtagtgttatttgaacaatcaaatg--agacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||| ||||||||||| || |||  ||||||||||||| ||||||| |||| |||||||||||||    
5350485 agtagtgatatttgaacaaccatatgtgagacaacttatgtaataacttattttatctctcttttcat 5350418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 28300534 - 28300601
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| ||||||||||| || |||| ||||||  ||||| ||||| | ||||||||||||||||    
28300534 tgagtagtgatatttgaacaaccatatgatacaactcttgtgacaacttttattttctctcttttcat 28300601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 52128944 - 52128905
Alignment:
32 gatcttcctcaagctccatttatgctctgaaatcaacaac 71  Q
    ||||||||||||||||||| |||| |||||||||||||||    
52128944 gatcttcctcaagctccatctatgttctgaaatcaacaac 52128905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 52129313 - 52129274
Alignment:
32 gatcttcctcaagctccatttatgctctgaaatcaacaac 71  Q
    ||||||||||||||||||| |||| |||||||||||||||    
52129313 gatcttcctcaagctccatctatgttctgaaatcaacaac 52129274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 7231895 - 7231961
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||||||||||| ||  ||| ||||||| ||||| || || ||||||||||||||||||    
7231895 gagtagtgatatttgaacaaccatttgatacaacttttgtgacaatttattttttctctcttttcat 7231961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 20380778 - 20380844
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||||||||||| ||  | | ||||||| ||||| ||||||||||||||| ||||||||    
20380778 gagtagtgatatttgaacaaccattttaaacaacttttgtgacaacttcttttttctcacttttcat 20380844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 46473310 - 46473244
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||| || ||||||||||| ||  ||| ||||||| | ||| ||||||||||||||||||||||||    
46473310 gagtaatgatatttgaacaaccatttgatacaacttttatgacaacttcttttttctctcttttcat 46473244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 47723284 - 47723230
Alignment:
255 tatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    |||||||||||||| |||| ||||||  ||||||||||||| |||||||| ||||    
47723284 tatttgaacaatcatatgatacaactcttgtgataacttctattttctctttttt 47723230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 5188389 - 5188352
Alignment:
275 acaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||| ||||| ||||||||||||||||||||||||    
5188389 acaacttttgtgacaacttcttttttctctcttttcat 5188352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 9099468 - 9099505
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttat 283  Q
    |||||||||||||||||||| || ||||||||||||||    
9099468 gagtagtgttatttgaacaaccatatgagacaacttat 9099505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 22813243 - 22813206
Alignment:
244 ttgagtagtgttatttgaacaatcaaatgagacaactt 281  Q
    ||||||||||||||| |||||| |||||||||||||||    
22813243 ttgagtagtgttattcgaacaaccaaatgagacaactt 22813206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 41957698 - 41957629
Alignment:
243 tttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||| ||||| ||||| ||  | | ||||||| |||||||| |||||||||||| ||||||||    
41957698 tttgagtagtgatatttaaacaaccattttaaacaacttttgtgataatttcttttttctcacttttcat 41957629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 48946020 - 48945963
Alignment:
255 tatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||  ||| |||| |||| |||||||||||||||||||  |||||||    
48946020 tatttgaacaatcatttgaaacaatttatatgataacttcttttttctcaattttcat 48945963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 31997985 - 31997921
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatg-tgataacttcttttttctctctttt 309  Q
    |||||||| ||||||||||| ||  ||||||||||| || ||| |||||||||| ||||||||||    
31997985 gagtagtgatatttgaacaaccatttgagacaacttttgatgacaacttcttttctctctctttt 31997921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 312
Target Start/End: Original strand, 32687887 - 32687915
Alignment:
284 gtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||||||||||||    
32687887 gtgataacttcttttttctctcttttcat 32687915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 41877498 - 41877566
Alignment:
246 gagtagtgttatttgaacaat-caaatgagacaacttatgtgataacttcttttt-tctctcttttcat 312  Q
    |||||||| |||||||||||| ||  | ||||||||||||||| || |||||||| |||||||||||||    
41877498 gagtagtggtatttgaacaattcattttagacaacttatgtgacaatttctttttctctctcttttcat 41877566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 1889333 - 1889263
Alignment:
242 ttttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
1889333 ttttgagtaatgttatttgaacaatcaaatgagacaatttatgtgacaacttcttttttctctcttttcat 1889263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 23045343 - 23045277
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||    
23045343 gagtagtgttatttgaacaaccaaatgagacaacttatgtgacaacttcttttttctctattttcat 23045277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 18917807 - 18917740
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||||||    
18917807 tgagtagtgttatttgaacaacaaaatgagacaatttatgtgacaacttcttttttctctcttttcat 18917740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 6639364 - 6639427
Alignment:
249 tagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||| ||||||||| ||||||||||| |||||||||| |||||||||||||    
6639364 tagtgttatttgaacaaccaaatgagataacttatgtgacaacttcttttctctctcttttcat 6639427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 19695580 - 19695646
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||||||||    
19695580 tgagtagtgttatttgaacaaccaaatgagacaacttatgtgacaactt-tttttcctctcttttcat 19695646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 13104661 - 13104595
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||| || ||||||||| || ||||| ||||| ||||||||||||||||||    
13104661 gagtagtgttatttgaacaaccatatgagacaatttttgtgacaacttattttttctctcttttcat 13104595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 32750180 - 32750114
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||| || ||||||||| || ||||| ||||| ||||||||||||||||||    
32750180 gagtagtgttatttgaacaaccatatgagacaatttttgtgacaacttattttttctctcttttcat 32750114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 3091923 - 3091857
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| |||||||||||| |  ||| ||||||| ||||| ||||||||||||||||||||||||    
3091923 gagtagtgatatttgaacaattatttgatacaacttttgtgacaacttcttttttctctcttttcat 3091857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 7086013 - 7086079
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||| || ||||||||| || ||||| ||||| |||| |||||||||||||    
7086013 gagtagtgttatttgaacaaccatatgagacaatttttgtgacaacttattttctctctcttttcat 7086079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 15901894 - 15901952
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctct 304  Q
    ||||||||||||||||||||||| |||||| ||||| ||||| ||||| ||||||||||    
15901894 gagtagtgttatttgaacaatcatatgagataacttttgtgacaacttattttttctct 15901952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 31296732 - 31296798
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| |||||||| || || ||| |||||||||||||| || |||||||||||||||||||||    
31296732 gagtagtgatatttgaataaccatatgggacaacttatgtgacaatttcttttttctctcttttcat 31296798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 42251809 - 42251875
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||||| ||||||||  ||  ||||||||||||| ||||||||||||||||||||||||    
42251809 gagtagtgatatttaaacaatcatttggaacaacttatgtgacaacttcttttttctctcttttcat 42251875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 1876241 - 1876302
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctt 307  Q
    |||||||||||||| ||||| || |||||||||||| ||||| |||||||||||||| ||||    
1876241 gagtagtgttatttcaacaaccatatgagacaacttttgtgacaacttcttttttctatctt 1876302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 23880280 - 23880211
Alignment:
243 tttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| |||||||||||||| || |||||||||||| | ||| || || ||||||||||||||||||    
23880280 tttgagtaatgttatttgaacaaccatatgagacaacttttatgacaatttattttttctctcttttcat 23880211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 34249763 - 34249696
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataactt-cttttttctctcttttcat 312  Q
    |||||||||||||||||||| || ||||||||| || ||||| |||||  ||||||||||||||||||    
34249763 gagtagtgttatttgaacaaccatatgagacaatttttgtgacaacttatttttttctctcttttcat 34249696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 25801704 - 25801766
Alignment:
250 agtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||| |||||||||||  |  ||||||||||| |||||| |||||||||||||||||||||||    
25801704 agtgatatttgaacaacaatttgagacaacttttgtgatcacttcttttttctctcttttcat 25801766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 14714170 - 14714102
Alignment:
244 ttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||| ||||||||||  ||  |||||||| || ||||| |||||||||| |||||||||||||    
14714170 ttgagtagtgatatttgaacatccatttgagacaatttttgtgacaacttcttttctctctcttttcat 14714102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 14140227 - 14140294
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| ||||||||||||||  | | | ||||| ||||| || |||||||||||||||||||||    
14140227 tgagtagtgatatttgaacaatcatttaaaataacttttgtgacaatttcttttttctctcttttcat 14140294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 23344877 - 23344944
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| |||||||||| |||  ||||||||||  | ||| |||||||||| |||||||||||||    
23344877 tgagtagtgatatttgaacattcatttgagacaactcttctgacaacttcttttctctctcttttcat 23344944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 43650436 - 43650499
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    ||||| || ||||| ||||||||  ||| ||||||||||||| || ||||||||||||||||||    
43650436 gagtaatgatatttaaacaatcatttgatacaacttatgtgacaatttcttttttctctctttt 43650499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 43665804 - 43665742
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    |||||||||||||||||||| |||| ||||||| |||||||| || || ||||| |||||||||    
43665804 gagtagtgttatttgaacaaccaaacgagacaatttatgtgacaa-ttttttttcctctctttt 43665742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 11164265 - 11164331
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||| ||| |||||||||||  |  ||| ||||||| ||||| ||||||||||||||||||||||||    
11164265 gagtggtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcat 11164331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 36133156 - 36133090
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| |||||||||||  |  | | ||||||| ||||| ||||||||||||||||||||||||    
36133156 gagtagtgatatttgaacaactatttcatacaacttttgtgacaacttcttttttctctcttttcat 36133090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 12600201 - 12600164
Alignment:
275 acaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||| ||||| ||||||||||||||||||||||||    
12600201 acaacttttgtgacaacttcttttttctctcttttcat 12600164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 13711214 - 13711177
Alignment:
275 acaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||| ||||| ||||||||||||||||||||||||    
13711214 acaacttttgtgacaacttcttttttctctcttttcat 13711177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 35580293 - 35580226
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
35580293 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgacaacttttttttcctctcttttcat 35580226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 24337240 - 24337311
Alignment:
241 tttttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||||||| ||||||||| || |||||||| | ||||||||||||||||||||||    
24337240 tttttgagtagtgttatttgaacaaccaaatgagataatttatgtgacagcttcttttttctctcttttcat 24337311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 51717173 - 51717239
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| |||||||||||||| |||||||||||||||||| || |||||||||||||||||||||    
51717173 gagtagtgatatttgaacaatcatatgagacaacttatgtgacaatttcttttttctctcttttcat 51717239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 25523085 - 25523151
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||| |||| |||||||||||||    
25523085 gagtagtgttatttgaacaaccatatgagacaacttttgtgataacttattttctctctcttttcat 25523151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 5123480 - 5123542
Alignment:
247 agtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    ||||||||||||||||||| || |||||||||||| ||||| ||||| |||||||||||||||    
5123480 agtagtgttatttgaacaaccatatgagacaacttttgtgacaacttattttttctctctttt 5123542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 38844377 - 38844445
Alignment:
244 ttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||| |||||||||||||| || |||||||||||| ||||| ||||| |||| |||||||||||||    
38844377 ttgagtaatgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctcttttcat 38844445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 37726945 - 37727006
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    |||||||||||||||||||| |||| ||||||||||| |||||||||  ||||| |||||||||    
37726945 gagtagtgttatttgaacaaccaaacgagacaacttaagtgataact--tttttcctctctttt 37727006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 28480422 - 28480493
Alignment:
241 tttttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||| |||||||||||  |  ||||||||||  ||||| |||||||||| |||||||||||||    
28480422 tttttgagtagtgatatttgaacaactatttgagacaactattgtgacaacttcttttctctctcttttcat 28480493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 52891748 - 52891809
Alignment:
254 ttatttgaacaatcaaatgagacaacttatgtgataacttcttttt---tctctcttttcat 312  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||||   |||||||||||||    
52891748 ttatttgaacaatcaaatgagataacttatgtgacaacttttttttttctctctcttttcat 52891809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 31275328 - 31275262
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||||||||||| ||  ||| ||||||| ||||| || |||||||||||||||||||||    
31275328 gagtagtgatatttgaacaaccatttgatacaacttttgtgacaatttcttttttctctcttttcat 31275262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 37547217 - 37547151
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||  |||||||||||| |  |||||||| ||||||||||||||||||||||||  |||||||    
37547217 gagtagtaatatttgaacaattatctgagacaatttatgtgataacttcttttttctcatttttcat 37547151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 42915108 - 42915174
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| |||||||||||  |  ||| ||||||| ||||| ||||||||||||||||||||||||    
42915108 gagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcat 42915174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 47998775 - 47998710
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||||||||||||||  ||| ||||||| ||||||||||| |||||||| |||||||||    
47998775 gagtagtgatatttgaacaatcatttgatacaacttttgtgataactt-ttttttctttcttttcat 47998710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 51389494 - 51389432
Alignment:
250 agtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||| ||||||||||| ||  ||| ||||||| ||||| ||||||||||||||||||||||||    
51389494 agtgatatttgaacaaccatttgatacaacttttgtgacaacttcttttttctctcttttcat 51389432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 54251349 - 54251403
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttctttttt 300  Q
    ||||||||||||||||||||  ||||||| |||||||||||| ||||| ||||||    
54251349 gagtagtgttatttgaacaactaaatgagtcaacttatgtgacaacttttttttt 54251403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 29384087 - 29384152
Alignment:
247 agtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||| |||||||||||||| |||| ||||||  ||||| ||||||| |||||||| |||||||    
29384087 agtagtgatatttgaacaatcatatgatacaactcttgtgacaacttctattttctcttttttcat 29384152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 35198862 - 35198907
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataa 290  Q
    |||||||| ||||||||||| | |||||||||||||||||||||||    
35198862 tgagtagtattatttgaacagttaaatgagacaacttatgtgataa 35198907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 39684807 - 39684766
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtga 287  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
39684807 gagtagtattatttgaacaaccaaatgagacaacttatgtga 39684766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 38160660 - 38160728
Alignment:
245 tgagtagtgttatttgaacaa-tcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| ||||||||||| |||  | ||||||||||||||| ||||| |||||||||| |||||||    
38160660 tgagtagtgatatttgaacaactcattttagacaacttatgtgacaacttattttttctcttttttcat 38160728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 46794403 - 46794439
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaactt 281  Q
    ||||||||||||||||||||| |||||||||||||||    
46794403 tgagtagtgttatttgaacaaccaaatgagacaactt 46794439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 53583016 - 53583080
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    |||||| |||||||||||||| || |||||||||||| ||||| ||||| |||| ||||| ||||    
53583016 tgagtactgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctatttt 53583080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 10994042 - 10994105
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    |||||||| ||||||||||||||  | |||||| ||||| || |||||||||| ||||||||||    
10994042 gagtagtgatatttgaacaatcattttagacaatttatgcgacaacttcttttctctctctttt 10994105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 28481300 - 28481367
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| |||||||||||  |  ||||||||||  ||||| |||||||||| |||||||||||||    
28481300 tgagtagtgatatttgaacaactatttgagacaactattgtgacaacttcttttctctctcttttcat 28481367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 28482175 - 28482242
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| |||||||||||  |  ||||||||||  ||||| |||||||||| |||||||||||||    
28482175 tgagtagtgatatttgaacaactatttgagacaactattgtgacaacttcttttctctctcttttcat 28482242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 281
Target Start/End: Original strand, 41119427 - 41119462
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaactt 281  Q
    |||||||||||||||||||| |||||||||||||||    
41119427 gagtagtgttatttgaacaaccaaatgagacaactt 41119462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 34116429 - 34116495
Alignment:
247 agtagtgttatttgaacaa-tcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||| ||||||||||| |||  | |||||| |||||||| ||||| ||||||||||||||||||    
34116429 agtagtgatatttgaacaactcattttagacaatttatgtgacaactttttttttctctcttttcat 34116495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 36444284 - 36444350
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| |||||||||||||| |||| |||| |  ||||| ||||||| |||||||| |||||||    
36444284 gagtagtgatatttgaacaatcatatgatacaattcttgtgacaacttctattttctcttttttcat 36444350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 5234359 - 5234423
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    ||||||||| ||||||||||| ||  ||| ||||||| ||||| || || |||||||||||||||    
5234359 tgagtagtgatatttgaacaaccatttgatacaacttttgtgacaattttttttttctctctttt 5234423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 15596580 - 15596512
Alignment:
244 ttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||| ||||||||||| ||  | | ||||||| ||||| |||||||||||||||  |||||||    
15596580 ttgagtagtgatatttgaacaaccattttaaacaacttttgtgacaacttcttttttctcatttttcat 15596512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 19376021 - 19376087
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
19376021 gagtagtgttatttgaacaactaaatgagacaacttatgtgacaacttcttttttctctcttttcat 19376087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 27392591 - 27392657
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||| || |||||||||||| ||||| ||||| |||||| |||||||||||    
27392591 gagtagtgttatttgaacaaccatatgagacaacttttgtgacaacttattttttttctcttttcat 27392657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 39595459 - 39595390
Alignment:
243 tttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| || ||||||||||| ||  ||| ||||||| ||||| ||||||||||||||||||||||||    
39595459 tttgagtaatgatatttgaacaaccatttgatacaacttttgtgacaacttcttttttctctcttttcat 39595390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 125279 - 125208
Alignment:
241 tttttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||| ||||||| ||||||||||| ||  ||| ||||||| || || ||||||||||||||||||||||||    
125279 ttttttagtagtgatatttgaacaaccatttgatacaacttttgcgacaacttcttttttctctcttttcat 125208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 11666362 - 11666295
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||| |||||||||| || || |||||| ||||| ||| | ||||||||||||||||||||||||    
11666362 tgagtagcgttatttgaaaaaccatatgagataacttttgtaacaacttcttttttctctcttttcat 11666295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 24431506 - 24431573
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| ||||||||||| ||  ||||||||||  ||||| |||||| |||||||||||||||||    
24431506 tgagtagtgatatttgaacaaccatttgagacaactattgtgacaacttcatttttctctcttttcat 24431573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 20719904 - 20719970
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||||||||||  ||  ||||||||||| ||||| |||||||||| |||||||||||||    
20719904 gagtagtgatatttgaacatccatttgagacaacttttgtgacaacttcttttctctctcttttcat 20719970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 29402353 - 29402301
Alignment:
257 tttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    ||||||||| ||  ||||||||||||||||| |||||||||||||| ||||||    
29402353 tttgaacaaccatgtgagacaacttatgtgacaacttcttttttctttctttt 29402301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 471984 - 471949
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaactt 281  Q
    ||||||||||||||||||||||| ||||||||||||    
471984 gagtagtgttatttgaacaatcatatgagacaactt 471949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 33393741 - 33393694
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataactt 293  Q
    |||||||||||||||||||| || |||||||||||| | |||||||||    
33393741 gagtagtgttatttgaacaaccatatgagacaacttttatgataactt 33393694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 33909976 - 33910043
Alignment:
246 gagtagtgttatttgaacaa-tcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||||||||||| | | || |||||| |||||||| |||||||||| |||||||||||||    
33909976 gagtagtgatatttgaacaacttatattagacaatttatgtgacaacttcttttctctctcttttcat 33910043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 2117529 - 2117595
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| |||||||||||  |  ||| ||||||| ||||| |||||||||||||||| |||||||    
2117529 gagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctcttttttcat 2117595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 11306878 - 11306812
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| |||||||||||  |  ||| ||||||| || || ||||||||||||||||||||||||    
11306878 gagtagtgatatttgaacaactatttgatacaacttttgagacaacttcttttttctctcttttcat 11306812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 16202906 - 16202840
Alignment:
243 tttgagtagtgttatttgaacaatcaaatgagacaacttat-gtgataacttcttttttctctcttt 308  Q
    ||||||||||| ||||||||||||||  | | ||||||| | |||| ||||||||||||||||||||    
16202906 tttgagtagtgatatttgaacaatcatttcatacaacttttagtgacaacttcttttttctctcttt 16202840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 33567128 - 33567194
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||| ||||||| ||  ||| ||||||| ||||| || |||||||||||||||||||||    
33567128 gagtagtgatatatgaacaaccatttgatacaacttttgtgacaatttcttttttctctcttttcat 33567194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 4834943 - 4834984
Alignment:
271 tgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
4834943 tgagacaactcttgtgataacttcttttctctctcttttcat 4834984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 6529193 - 6529160
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaa 278  Q
    ||||||||||||||||||||| ||||||||||||    
6529193 tgagtagtgttatttgaacaaccaaatgagacaa 6529160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 42909891 - 42909854
Alignment:
244 ttgagtagtgttatttgaacaatcaaatgagacaactt 281  Q
    |||||||||||||||||||||| || ||||||||||||    
42909891 ttgagtagtgttatttgaacaaccatatgagacaactt 42909854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 9714023 - 9714087
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    ||||||||| ||||||||||| || |||| ||||||  ||||| ||||||| |||||| ||||||    
9714023 tgagtagtgatatttgaacaaccatatgatacaactcttgtgacaacttctattttctatctttt 9714087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 28824687 - 28824619
Alignment:
244 ttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||| | ||| ||||||||||||    
28824687 ttgagtagtgttatttgaacaaccaaatgagacaacttatgtgacaacttttgtttcctctcttttcat 28824619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 26153843 - 26153776
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| ||||||||||| || |||||||||||||||||| |||||||  |||||||||||||||    
26153843 tgagtagtgatatttgaacaaacatatgagacaacttatgtgacaacttctcatttctctcttttcat 26153776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 19510246 - 19510312
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||||| || ||||||||| ||| | ||||| ||||||||||||||||||    
19510246 gagtagtgttatttgaacaatcatataagacaacttttgtaacaacttattttttctctcttttcat 19510312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 2790363 - 2790293
Alignment:
243 tttgagtagtgttatttgaacaa-tcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||| ||||||||||| |||  | ||||||||||||||| |||||||||| |||||||||||||    
2790363 tttgagtagtgatatttgaacaactcattttagacaacttatgtgacaacttcttttctctctcttttcat 2790293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 10591338 - 10591272
Alignment:
242 ttttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttt 308  Q
    |||||||||||| ||||||||||| ||  ||||||||||| ||||| ||||||||||||||| ||||    
10591338 ttttgagtagtgatatttgaacaaccatttgagacaacttttgtgacaacttcttttttctcacttt 10591272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 33684862 - 33684796
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||||||  | |||| ||||||| ||||| |||||||||||||| |||||||||    
33684862 gagtagtgttatttgaacaactatatgaaacaacttttgtgacaacttcttttttctatcttttcat 33684796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 5198646 - 5198715
Alignment:
244 ttgagtagtgttatttgaacaa-tcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||| |||| ||||||||||| |||  | |||||||||||||||||| |||||||||||||||||||||    
5198646 ttgagcagtgatatttgaacaactcattttagacaacttatgtgataatttcttttttctctcttttcat 5198715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 21752841 - 21752774
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||||  | |||| ||||||| ||||| || || ||||||||||||||||||    
21752841 tgagtagtgttatttgaacaacaatatgaaacaacttttgtgacaatttattttttctctcttttcat 21752774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 5978761 - 5978695
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||||||||||| || |||| ||||||  ||||| ||||||| ||||||||||||||||    
5978761 gagtagtgatatttgaacaaccatatgatacaactcttgtgacaacttctattttctctcttttcat 5978695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 45432131 - 45432062
Alignment:
241 tttttgagtagtgttatttgaacaa-tcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    ||||| ||||||| ||||||||||| |||  | ||||||||||||||| |||||||||||||||| ||||    
45432131 ttttttagtagtgatatttgaacaactcattttagacaacttatgtgacaacttcttttttctctttttt 45432062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 12142067 - 12142000
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| ||||||||||| ||  ||| ||||||| ||||| ||||| |||||||| |||||||||    
12142067 tgagtagtgatatttgaacaaccatttgatacaacttttgtgacaactttttttttctttcttttcat 12142000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 21858930 - 21858863
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||| ||||||||||| ||  | | ||||||| |||||||||||||||||| || ||||||||    
21858930 tgagtagtgatatttgaacaaccattttaaacaacttttgtgataacttcttttttttcacttttcat 21858863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 24761509 - 24761470
Alignment:
32 gatcttcctcaagctccatttatgctctgaaatcaacaac 71  Q
    ||||||||||||||||||| |||| |||||||||||||||    
24761509 gatcttcctcaagctccatctatgttctgaaatcaacaac 24761470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 24761878 - 24761839
Alignment:
32 gatcttcctcaagctccatttatgctctgaaatcaacaac 71  Q
    ||||||||||||||||||| |||| |||||||||||||||    
24761878 gatcttcctcaagctccatctatgttctgaaatcaacaac 24761839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 37351879 - 37351942
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    |||||||| ||||||||||||||  ||| | ||||| ||||| || ||||||||||||||||||    
37351879 gagtagtgatatttgaacaatcatttgatataacttttgtgacaatttcttttttctctctttt 37351942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 38995912 - 38995978
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||| || |||||||||||||| |||  ||||||||||||| || ||||||||| ||| |||||||    
38995912 gagtattgatatttgaacaatcatatgtaacaacttatgtgacaatttcttttttttcttttttcat 38995978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 46651854 - 46651788
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||| ||||||||||| || |||| |||| |  ||||| ||||||| ||||||||||||||||    
46651854 gagtagtgatatttgaacaaccatatgatacaattcttgtgacaacttctattttctctcttttcat 46651788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 366839 - 366773
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||||||||    
366839 gagtaatgttatttgaacaaccaaatgagacaacttatgtgacaacttttttttcctctcttttcat 366773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 39010996 - 39010930
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||| || |||||||||||| ||||| ||||| ||||||||||||||||||    
39010996 gagtagtgttatttgaacaaccatatgagacaacttttgtgacaacttattttttctctcttttcat 39010930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 50659081 - 50659147
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||| || |||| ||||||||||||| |||||||||| |||||||||||||    
50659081 gagtagtgttatttgaacaaccatatgaaacaacttatgtgacaacttcttttctctctcttttcat 50659147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 249 - 312
Target Start/End: Complemental strand, 45042439 - 45042377
Alignment:
249 tagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | |||||| |||||||||||    
45042439 tagtgttatttgaacaaccaaatgagacaacttatgtgataacct-ttttttttctcttttcat 45042377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 36690459 - 36690527
Alignment:
244 ttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||||| || |||||||||||| ||||| ||||| |||| ||||| |||||||    
36690459 ttgagtagtgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctattttcat 36690527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 36706560 - 36706628
Alignment:
244 ttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||||| || |||||||||||| ||||| ||||| |||| ||||| |||||||    
36706560 ttgagtagtgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctattttcat 36706628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 28253197 - 28253131
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||| ||||||||||||||| || |||||||||||| ||| | |||||||||| |||||||||||||    
28253197 gagtggtgttatttgaacaaccatatgagacaacttttgtaacaacttcttttctctctcttttcat 28253131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 47015201 - 47015263
Alignment:
250 agtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||| ||||||||||||||||| ||| || || ||||| ||||||||||||    
47015201 agtgttatttgaacaaccaaatgagacaacttatatgacaatttttttttcctctcttttcat 47015263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 1615217 - 1615152
Alignment:
248 gtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcata 313  Q
    |||||||||||||||||| || |||||| ||||| ||||| ||||| | |||||||||||||||||    
1615217 gtagtgttatttgaacaaccatatgagataacttttgtgacaacttatattttctctcttttcata 1615152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 40610413 - 40610345
Alignment:
244 ttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||| ||||||||||  ||  ||||||||||| ||||| |||||||||| |||||||||||||    
40610413 ttgagtagtgatatttgaacatccatttgagacaacttttgtgacaacttcttttctctctcttttcat 40610345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 31378664 - 31378597
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttc-tctcttttcat 312  Q
    ||||||||||||||||||||  |||||||||||||||||| | ||||| ||||| | |||||||||||    
31378664 gagtagtgttatttgaacaactaaatgagacaacttatgtaacaacttttttttccttctcttttcat 31378597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 34187442 - 34187380
Alignment:
250 agtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||| ||||||||||| ||  |||||||| |||||||| ||||||| ||||||||||||||||    
34187442 agtgatatttgaacaaccatgtgagacaatttatgtgacaacttctcttttctctcttttcat 34187380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 50226768 - 50226828
Alignment:
246 gagtagtgttatttgaacaat-caaatgagacaacttatgtgataacttcttttttctctc 305  Q
    |||||||| |||||||||||| ||  | ||||||||||||||||||||| |||||||||||    
50226768 gagtagtgatatttgaacaattcattttagacaacttatgtgataacttattttttctctc 50226828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 52233125 - 52233189
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttt-tctctctttt 309  Q
    |||||||||||||||||||| || |||||| || || |||| |||||||||||| ||||||||||    
52233125 gagtagtgttatttgaacaaccatatgagataatttttgtgttaacttctttttctctctctttt 52233189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 50141827 - 50141890
Alignment:
249 tagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||  | |||||||||||| ||||| || || |||| |||||||||||||    
50141827 tagtgttatttgaacaactatatgagacaacttttgtgacaatttattttctctctcttttcat 50141890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 31437000 - 31436942
Alignment:
246 gagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctct 304  Q
    |||||||||||||||||||| || |||||| ||||| ||||| || || ||||||||||    
31437000 gagtagtgttatttgaacaaccatatgagataacttttgtgacaatttattttttctct 31436942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 22389444 - 22389480
Alignment:
276 caacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||| ||||| ||||||||||||||||||||||||    
22389444 caacttttgtgacaacttcttttttctctcttttcat 22389480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 25302536 - 25302600
Alignment:
249 tagtgttatttgaacaa-tcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||| ||||||||||| |||  | |||||| |||||||| ||||| ||||||||||||||||||    
25302536 tagtgatatttgaacaactcattttagacaatttatgtgacaactttttttttctctcttttcat 25302600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 9736 - 9803
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||||||||||||||||||||||| ||||| |||||| ||||| ||||| |||||| |||||||||||    
9736 tgagtagtgttatttgaacaatcatatgaggcaacttttgtgacaacttattttttttctcttttcat 9803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0501 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 10404 - 10471
Alignment:
245 tgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    |||| |||||||||||||||| || |||||||||||| ||||| ||||| |||| |||||||||||||    
10404 tgagcagtgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctcttttcat 10471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 9636 - 9570
Alignment:
243 tttgagtagtgttatttgaacaatcaaatgagacaacttatgtgataacttcttttttctctctttt 309  Q
    ||||||||||| |||||||||||  | |||||||| |||  |||||||||||  |||||||||||||    
9636 tttgagtagtgatatttgaacaactatatgagacagctttggtgataacttccattttctctctttt 9570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 6584 - 6543
Alignment:
271 tgagacaacttatgtgataacttcttttttctctcttttcat 312  Q
    ||||||||||   |||||||||||||||||||||||||||||    
6584 tgagacaactctcgtgataacttcttttttctctcttttcat 6543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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