View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_low_22 (Length: 370)
Name: NF19372_low_22
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 22938754 - 22939105
Alignment:
| Q |
1 |
agaatttgggtaatagagtggcaatttaacccaccaaatatatatccattcaactcgtttattgataaatccatgtcagatcgattaattttcatataaa |
100 |
Q |
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| T |
22938754 |
agaatttgggtaatagactggcaatttaacccatcaaatatatatccattcaactcgtttattgataaatccatgttagatcgattaattttcatataaa |
22938853 |
T |
|
| Q |
101 |
ttcatgtccatccaaaccatctattttgtcacttataataggtatttctagcaagagaaggcgtattgaagtgcggtgttgtacatttgtagtgaccatg |
200 |
Q |
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| T |
22938854 |
tccatgtccatccaaaccatctattttgtcacttataacaggtatttctagcaagaaaaggcgtattgaagtgcggtgttgtacatttgttgtgacaatg |
22938953 |
T |
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| Q |
201 |
catagctctaaggtagataattaacataagtagttttataaccgattttttgagcaaatgaaaccgaaaatccaaaccataccaaaaaaggattggagct |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22938954 |
aatagctctaaggtagataaataacataagtagttttataaccgattttttgagcaaatgaaaccgaaaatccaaaccatatcaaaaaaggattggagct |
22939053 |
T |
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| Q |
301 |
tgtttggggttgttttaaactgaatcaaatcgacctagttttattcgaaact |
352 |
Q |
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|||||||| ||||||||||||||| |||| |||| || |||| ||| ||||| |
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| T |
22939054 |
tgtttgggtttgttttaaactgaaccaaaccgacttaattttcttcaaaact |
22939105 |
T |
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