View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19372_low_26 (Length: 315)

Name: NF19372_low_26
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19372_low_26
NF19372_low_26
[»] chr2 (16 HSPs)
chr2 (1-299)||(5565587-5565885)
chr2 (162-223)||(30265241-30265302)
chr2 (162-222)||(14385218-14385278)
chr2 (162-221)||(30523415-30523474)
chr2 (162-262)||(32951014-32951116)
chr2 (162-245)||(8183984-8184068)
chr2 (162-222)||(33206925-33206985)
chr2 (162-222)||(5002669-5002729)
chr2 (162-213)||(15803310-15803361)
chr2 (162-213)||(36030931-36030982)
chr2 (162-279)||(39819977-39820096)
chr2 (167-213)||(16625697-16625742)
chr2 (165-289)||(39925129-39925255)
chr2 (162-214)||(26618496-26618548)
chr2 (175-214)||(38325257-38325297)
chr2 (162-222)||(39913411-39913471)
[»] scaffold0110 (1 HSPs)
scaffold0110 (164-273)||(7525-7635)
[»] chr1 (18 HSPs)
chr1 (163-221)||(34749899-34749957)
chr1 (162-215)||(718464-718517)
chr1 (162-216)||(41432651-41432705)
chr1 (162-223)||(30543245-30543306)
chr1 (162-222)||(28848682-28848742)
chr1 (163-211)||(52073352-52073400)
chr1 (157-230)||(50162271-50162345)
chr1 (162-222)||(23800486-23800546)
chr1 (166-225)||(23079916-23079975)
chr1 (162-221)||(33579391-33579450)
chr1 (162-213)||(43530190-43530241)
chr1 (162-213)||(51303067-51303118)
chr1 (196-233)||(33643810-33643848)
chr1 (162-223)||(17556930-17556991)
chr1 (164-213)||(50097754-50097803)
chr1 (162-222)||(17416601-17416661)
chr1 (162-214)||(39508906-39508958)
chr1 (162-233)||(50084265-50084337)
[»] chr4 (10 HSPs)
chr4 (162-290)||(9021072-9021201)
chr4 (162-255)||(15451186-15451280)
chr4 (180-286)||(34236356-34236462)
chr4 (162-252)||(42777153-42777243)
chr4 (166-222)||(24662630-24662686)
chr4 (163-250)||(15498651-15498736)
chr4 (168-222)||(42759535-42759589)
chr4 (191-257)||(24682844-24682911)
chr4 (162-212)||(13984867-13984916)
chr4 (174-223)||(45022419-45022468)
[»] chr7 (8 HSPs)
chr7 (162-288)||(23465816-23465943)
chr7 (162-222)||(14676368-14676428)
chr7 (162-255)||(45510480-45510574)
chr7 (165-213)||(46303389-46303437)
chr7 (162-232)||(42592999-42593070)
chr7 (162-212)||(38138069-38138119)
chr7 (162-202)||(24923297-24923337)
chr7 (162-213)||(42112850-42112902)
[»] chr3 (15 HSPs)
chr3 (162-255)||(1132784-1132878)
chr3 (162-255)||(32858968-32859061)
chr3 (162-254)||(15499149-15499242)
chr3 (162-232)||(4247255-4247326)
chr3 (173-278)||(36598392-36598497)
chr3 (162-222)||(23568201-23568261)
chr3 (162-233)||(43273945-43274015)
chr3 (162-213)||(3334002-3334053)
chr3 (162-213)||(35283225-35283276)
chr3 (162-213)||(53620359-53620410)
chr3 (162-223)||(2984029-2984090)
chr3 (162-223)||(50201706-50201767)
chr3 (188-224)||(37457190-37457226)
chr3 (162-214)||(38401810-38401862)
chr3 (179-223)||(54089336-54089380)
[»] chr5 (14 HSPs)
chr5 (162-290)||(7398595-7398724)
chr5 (179-233)||(2561256-2561311)
chr5 (162-222)||(19389711-19389771)
chr5 (162-214)||(28523756-28523808)
chr5 (162-213)||(17668026-17668077)
chr5 (162-255)||(9684640-9684734)
chr5 (162-210)||(3924751-3924799)
chr5 (162-233)||(33682510-33682582)
chr5 (162-222)||(35042342-35042402)
chr5 (162-213)||(4841601-4841652)
chr5 (164-233)||(35704752-35704822)
chr5 (179-255)||(6816378-6816455)
chr5 (166-214)||(31632976-31633024)
chr5 (180-224)||(43496646-43496690)
[»] chr8 (10 HSPs)
chr8 (163-222)||(37388418-37388477)
chr8 (162-222)||(3394099-3394159)
chr8 (162-213)||(13258624-13258675)
chr8 (162-230)||(13537480-13537550)
chr8 (162-230)||(13627028-13627098)
chr8 (162-213)||(1839712-1839763)
chr8 (180-215)||(5941220-5941255)
chr8 (163-214)||(15108155-15108206)
chr8 (188-222)||(4429587-4429621)
chr8 (162-213)||(39194069-39194121)
[»] chr6 (4 HSPs)
chr6 (162-246)||(16329517-16329602)
chr6 (162-225)||(13120301-13120365)
chr6 (162-253)||(34557024-34557116)
chr6 (196-286)||(24379774-24379865)
[»] scaffold1763 (1 HSPs)
scaffold1763 (162-222)||(487-547)
[»] scaffold0008 (1 HSPs)
scaffold0008 (37-81)||(250309-250353)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 5565587 - 5565885
Alignment:
Q  1 tttgtttttgatcacagtagcgagacaacgaagaatggaatagaggagagtgacgacgttgtgattgactgagatggtgacgggaatcagtggggatggc 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5565587 tttgtttttgatcacagcagcgagacaacgaagaatggaatagaggagagtgacgacgttgtgattgactgagatggtgacgggaatcaatggggatggc 5565686  T
Q  101 ggagggcggttacaagaggagaggggagaagaagattaaaaaagatggcgacggatatatgattaatttattattctataaaaaatcactctttcaaaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  5565687 ggagggcggttacaagaggagaggggagaagaagattaaaaaagatggcgacggatatctgattaatttattattctgtaaaaaatcactctttcaaaaa 5565786  T
Q  201 atgtgaaagattttactattttttctatatttcaaactcttcaaagccttccctttctctctactccaaactctcaaataaagtcttagatggtatctt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5565787 atgtgaaagattttactattttttctatatttcaaactcttcaaagccttccctttctctctactccaaactctcaaataaagccttagatggtatctt 5565885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 30265302 - 30265241
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt 223  Q
    |||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||||||    
T  30265302 attaatttattattctctaaaaaattactctttcaaaaaatataaaagattttactattttt 30265241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 14385218 - 14385278
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||||||||| ||||| ||||||||||   |||||||||||||||||||||||||||||||    
T  14385218 attaatttatcattctctaaaaaatcatcttttcaaaaaatgtgaaagattttactatttt 14385278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 30523415 - 30523474
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattt 221  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||||||||||| ||||    
T  30523415 attaatttatcattctttaaaaaactactctttcaaaaaatgtgaaagattttaccattt 30523474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 32951014 - 32951116
Alignment:
Q  162 attaatttattattctataaaaaa-tcactctttcaaaaaatgtgaaagattttactattttt-tctatatttcaaactcttcaaagccttccctttctc 259  Q
    |||||||||| ||||| ||||||| | ||||||| |||| |||||||||||||||| | |||  |||||||||| ||||||||||||||| || || |||    
T  32951014 attaatttatcattctctaaaaaagttactcttttaaaagatgtgaaagattttacaactttgctctatatttccaactcttcaaagcctacctttcctc 32951113  T
Q  260 tct 262  Q
    |||    
T  32951114 tct 32951116  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 8184068 - 8183984
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt-tctatatttcaaactcttcaaa 245  Q
    |||||||||| ||||| |||||||| |||||||||||||||| |||||| ||||  ||||||  ||||||||| |||||| ||||    
T  8184068 attaatttatcattctctaaaaaattactctttcaaaaaatgcgaaagaatttatcatttttccctatatttccaactctccaaa 8183984  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 33206925 - 33206985
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||||||||  ||||| ||||||| ||||||||||||||||||||||||||| || |||||    
T  33206925 attaatttaacattctctaaaaaaacactctttcaaaaaatgtgaaagatttgaccatttt 33206985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 5002729 - 5002669
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    ||||||||||   ||| ||||||||  |||||||||||||||| |||||||||||||||||    
T  5002729 attaatttatctctctttaaaaaatttctctttcaaaaaatgtaaaagattttactatttt 5002669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 15803310 - 15803361
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    |||||||||| | ||| |||||||  ||||||||||||||||||||||||||    
T  15803310 attaatttatcactctctaaaaaaatactctttcaaaaaatgtgaaagattt 15803361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 36030931 - 36030982
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    |||||||||| ||||| |||||||  |||||||| |||||||||||||||||    
T  36030931 attaatttatcattctctaaaaaaatactctttccaaaaatgtgaaagattt 36030982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 279
Target Start/End: Original strand, 39819977 - 39820096
Alignment:
Q  162 attaatttattattctata-aaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccctttctc 259  Q
    |||||||||| |||||||  |||||| | || |||| ||||||||||||||||||| |||||   ||||||||| ||| || ||| |||||| ||| | |    
T  39819977 attaatttatcattctatccaaaaattagtcgttcagaaaatgtgaaagattttaccattttcccctatatttccaaccctccaacgccttctcttcccc 39820076  T
Q  260 tctactccaaactctcaaat 279  Q
    ||| |||||||||| |||||    
T  39820077 tctcctccaaactcccaaat 39820096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 16625742 - 16625697
Alignment:
Q  167 tttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  16625742 tttatcattctctaaaaaat-actctttcaaaaaatgtgaaagattt 16625697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 289
Target Start/End: Original strand, 39925129 - 39925255
Alignment:
Q  165 aatttattattctataaaaaa-tcactctttcaaaaaatgtgaaagattttactatt-ttttctatatttcaaactcttcaaagccttccctttctctct 262  Q
    ||||||| ||||||||||||| | | ||| ||||||||||||||||||||||| |||     ||||||||| ||| ||||||||  ||||||| | ||||    
T  39925129 aatttatcattctataaaaaaattagtctctcaaaaaatgtgaaagattttaccattaccccctatatttccaacccttcaaagttttcccttcccctct 39925228  T
Q  263 actccaaactctcaaataaagtcttag 289  Q
     ||| |||| |||||| |||| |||||    
T  39925229 cctcaaaaccctcaaacaaagccttag 39925255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 26618548 - 26618496
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatttt 214  Q
    |||||||||| ||||| || ||||| ||| ||||||| |||||||||||||||    
T  26618548 attaatttatcattctttataaaattactgtttcaaataatgtgaaagatttt 26618496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 38325257 - 38325297
Alignment:
Q  175 tctataaaaaatcactctttc-aaaaaatgtgaaagatttt 214  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  38325257 tctaaaaaaaatcactctttcaaaaaaatgtgaaagatttt 38325297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 39913411 - 39913471
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||||||||| |||| ||||||||| | ||||| ||| ||| ||||||||||||| |||||    
T  39913411 attaatttatcattccataaaaaattagtctttaaaataatttgaaagattttaccatttt 39913471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 273
Target Start/End: Complemental strand, 7635 - 7525
Alignment:
Q  164 taatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccctttctctct 262  Q
    ||||||| |||||| ||||||   ||||||| ||||||||||||||||||  ||||||| |||||||||||| |||||||||| || |||||||| |||     
T  7635 taatttactattctctaaaaatatactctttgaaaaaatgtgaaagatttatctattttcttctatatttcacactcttcaaatccctccctttccctcc 7536  T
Q  263 actccaaactc 273  Q
     ||||||||||    
T  7535 tctccaaactc 7525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 34749957 - 34749899
Alignment:
Q  163 ttaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattt 221  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  34749957 ttaatttatcattctctaaaaaatcactctttcaaaaaatgtgaaagattttaccattt 34749899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 718517 - 718464
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatttta 215  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  718517 attaatttatcattctttaaaaaatcactctttcgaaaaatgtgaaagatttta 718464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 41432705 - 41432651
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttac 216  Q
    |||||||||||||||| |||||||| |||||| ||||||| ||||||||||||||    
T  41432705 attaatttattattctctaaaaaattactcttgcaaaaaacgtgaaagattttac 41432651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 30543306 - 30543245
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt 223  Q
    |||||||||| ||||| |||||||| | ||||||||||||||| ||||||||||| ||||||    
T  30543306 attaatttatcattctctaaaaaattattctttcaaaaaatgtaaaagattttaccattttt 30543245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 28848742 - 28848682
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||||||||| ||||| |||||||| ||||||| ||||| ||||||||||||||| |||||    
T  28848742 attaatttatcattctctaaaaaatgactctttaaaaaattgtgaaagattttacaatttt 28848682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 52073400 - 52073352
Alignment:
Q  163 ttaatttattattctataaaaaatcactctttcaaaaaatgtgaaagat 211  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||||||    
T  52073400 ttaatttatcattctctaaaaaattactctttcaaaaaatgtgaaagat 52073352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 50162271 - 50162345
Alignment:
Q  157 atatgattaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatat 230  Q
    |||| |||||||| | ||||| ||||||||  |||||||||||||| |||||||||||| |||||| ||||||||    
T  50162271 atattattaatttttcattctctaaaaaatttctctttcaaaaaatatgaaagattttattattttcttctatat 50162345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 23800486 - 23800546
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||| |||||    
T  23800486 attaatttatgattctctaaaaaattactcttttaaaaaatataaaagattttacaatttt 23800546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 23079916 - 23079975
Alignment:
Q  166 atttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttttc 225  Q
    |||||| ||||| || ||||||||||| ||||||||| ||||| ||||| ||||||||||    
T  23079916 atttatcattctctataaaatcactctctcaaaaaatttgaaatatttttctattttttc 23079975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 33579391 - 33579450
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattt 221  Q
    |||||||||| ||||| |||||||| ||||||||||||| ||| ||||| ||||| ||||    
T  33579391 attaatttatcattctctaaaaaattactctttcaaaaattgtaaaagactttaccattt 33579450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 43530241 - 43530190
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    |||||||||| | ||| ||||||| |||||||| ||||||||||||||||||    
T  43530241 attaatttatcactctctaaaaaaacactcttttaaaaaatgtgaaagattt 43530190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 51303118 - 51303067
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    |||||||||| ||||| ||||||  |||||||| ||||||||||||||||||    
T  51303118 attaatttatcattctctaaaaatacactctttgaaaaaatgtgaaagattt 51303067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 33643810 - 33643848
Alignment:
Q  196 aaaaaatgtgaaagattttactattttt-tctatatttc 233  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  33643810 aaaaaatgtgaaagattttactatttttctctatatttc 33643848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 17556930 - 17556991
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt 223  Q
    |||||||||| | ||| ||| ||| |||||||| ||||||||||||||||||  ||||||||    
T  17556930 attaatttatcactctctaagaaaacactctttaaaaaaatgtgaaagatttctctattttt 17556991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 50097754 - 50097803
Alignment:
Q  164 taatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    |||||||| | ||| |||||||  ||||||||||||||||||||||||||    
T  50097754 taatttatcactctctaaaaaaatactctttcaaaaaatgtgaaagattt 50097803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 17416661 - 17416601
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||||||||| | ||| |||||||| |||||| |||||| ||||||||||| ||| |||||    
T  17416661 attaatttatcaatctctaaaaaattactcttacaaaaactgtgaaagattgtaccatttt 17416601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 39508906 - 39508958
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatttt 214  Q
    |||||||||| ||||| |||||| |  ||||||| ||||||||||||||||||    
T  39508906 attaatttatgattctctaaaaatttgctctttccaaaaatgtgaaagatttt 39508958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 50084265 - 50084337
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttttt-ctatatttc 233  Q
    |||||||||| | ||| ||| ||| |||||||||||||||||||||| ||||  | ||||||| |||||||||    
T  50084265 attaatttatcactctttaagaaaacactctttcaaaaaatgtgaaaaatttctcaattttttcctatatttc 50084337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 290
Target Start/End: Original strand, 9021072 - 9021201
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccctttctct 260  Q
    |||||||||| || || |||||||| | ||||| ||||||||||||||||||||| |||||   ||||||||| ||| |||||||| |||||||| ||||    
T  9021072 attaatttatcatactctaaaaaattaatcttttaaaaaatgtgaaagattttaccattttcccctatatttccaacccttcaaagtcttcccttcctct 9021171  T
Q  261 ctactccaaactctcaaataaagtcttaga 290  Q
    |  |||||||||  |||  |||||||||||    
T  9021172 ccgctccaaacttccaaccaaagtcttaga 9021201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 15451280 - 15451186
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt-tctatatttcaaactcttcaaagccttccctt 255  Q
    |||||||||| ||| | |||||||| ||||||||||||||||||||||||||||| ||||||  ||||||||| ||| || |||| |||| ||||    
T  15451280 attaatttatcattatttaaaaaattactctttcaaaaaatgtgaaagattttaccatttttcactatatttctaaccctccaaaacctttcctt 15451186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 286
Target Start/End: Complemental strand, 34236462 - 34236356
Alignment:
Q  180 aaaaaatcactctttcaaaaaatgtgaaagattttactattttttctatatttcaaactcttcaaagccttccctttctctctactccaaactctcaaat 279  Q
    |||||||||||||||||||||||||||||||||||   |||||| ||||||||  |||  | ||||| |||||||| | ||||  |||||||||  |||     
T  34236462 aaaaaatcactctttcaaaaaatgtgaaagattttgtcatttttcctatattttcaaccatccaaagtcttcccttcccctctcttccaaactcctaaac 34236363  T
Q  280 aaagtct 286  Q
    |||||||    
T  34236362 aaagtct 34236356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 42777243 - 42777153
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttttctatatttcaaactcttcaaagccttcc 252  Q
    |||||||||| ||||| ||  |||||| ||||| |||||||||||||| |||||| | |||||||||||||  ||| || |||||||||||    
T  42777243 attaatttatcattctctatcaaatcattctttaaaaaaatgtgaaagcttttaccactttttctatattttcaaccctccaaagccttcc 42777153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 24662686 - 24662630
Alignment:
Q  166 atttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||||| ||||| |||||||| ||||||||| ||||||||||||||||||| |||||    
T  24662686 atttatcattctctaaaaaattactctttcagaaaatgtgaaagattttaccatttt 24662630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 15498736 - 15498651
Alignment:
Q  163 ttaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt-tctatatttcaaactcttcaaagcctt 250  Q
    ||||||||| ||| | |||||||| |||||||||||   ||||||||||||||| |||||| |||||||||| ||| ||||||| ||||    
T  15498736 ttaatttatcattatttaaaaaattactctttcaaa---tgtgaaagattttaccatttttctctatatttctaacccttcaaaacctt 15498651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 42759589 - 42759535
Alignment:
Q  168 ttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||| ||||| |||||| | ||||||||||||||||||||||||||||| |||||    
T  42759589 ttatcattctctaaaaatttactctttcaaaaaatgtgaaagattttacaatttt 42759535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 24682911 - 24682844
Alignment:
Q  191 ctttcaaaaaatgtgaaagattttactattttttc-tatatttcaaactcttcaaagccttccctttc 257  Q
    |||| ||||||| |||||||||||||||||||  | |||||||| ||| |||||||| ||||||||||    
T  24682911 ctttaaaaaaatatgaaagattttactattttcccttatatttccaacccttcaaagtcttccctttc 24682844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 13984916 - 13984867
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatt 212  Q
    |||||||||||| ||| |||||||| ||||||||||||||| |||||||||    
T  13984916 attaatttattactctctaaaaaat-actctttcaaaaaatatgaaagatt 13984867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 45022468 - 45022419
Alignment:
Q  174 ttctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt 223  Q
    |||| |||||||  ||||||||||||||||||||||||||  ||||||||    
T  45022468 ttctctaaaaaaatactctttcaaaaaatgtgaaagatttctctattttt 45022419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 23465943 - 23465816
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccctttctct 260  Q
    |||||||||| ||||| |||||||  | ||||| ||||||||||||||||||||| |||||   ||||||||| ||| |||||||| |||||||| | ||    
T  23465943 attaatttatcattctctaaaaaactattcttttaaaaaatgtgaaagattttaccattttcccctatatttccaacccttcaaagtcttcccttcccct 23465844  T
Q  261 ctactccaaactctcaaataaagtctta 288  Q
    |  |||||||||| |||| |||| ||||    
T  23465843 cccctccaaactcccaaacaaagcctta 23465816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 14676368 - 14676428
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||||||||| ||||  |||||||| |||||||||||||||||||||||||| || |||||    
T  14676368 attaatttatcattccctaaaaaattactctttcaaaaaatgtgaaagatttgaccatttt 14676428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 45510480 - 45510574
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactat-tttttctatatttcaaactcttcaaagccttccctt 255  Q
    |||||||||| ||||| |||||||| ||||||||| |||||||||||  |||||| || ||   ||||||||| ||| || ||||||||||||||    
T  45510480 attaatttatcattctctaaaaaattactctttcacaaaatgtgaaaatttttacgatcttccactatatttccaaccctccaaagccttccctt 45510574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 46303389 - 46303437
Alignment:
Q  165 aatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    ||||||| ||||| ||||||| |||||||||||||||| ||||||||||    
T  46303389 aatttatcattctttaaaaaaacactctttcaaaaaatatgaaagattt 46303437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 42593070 - 42592999
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactat-tttttctatattt 232  Q
    ||||||||||||| ||||||||||| ||  ||||||||||  ||||||||||||| || ||| |||||||||    
T  42593070 attaatttattatgctataaaaaattacattttcaaaaaacatgaaagattttaccatctttctctatattt 42592999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 38138069 - 38138119
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatt 212  Q
    |||||||||| ||||| |||||||  ||||| |||||||||||||||||||    
T  38138069 attaatttatcattctctaaaaaaatactctatcaaaaaatgtgaaagatt 38138119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 24923337 - 24923297
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaat 202  Q
    |||||||||| ||||| ||||||| ||||||||||||||||    
T  24923337 attaatttatcattctctaaaaaaccactctttcaaaaaat 24923297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 42112902 - 42112850
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaa-aaatgtgaaagattt 213  Q
    |||| ||||| ||||| ||||||| |||||||||||| |||||||||||||||    
T  42112902 attagtttatcattctctaaaaaaacactctttcaaagaaatgtgaaagattt 42112850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 1132878 - 1132784
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccctt 255  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||  |||||   ||||||||| ||| ||  |||||||||||||    
T  1132878 attaatttatcattctctaaaaaattactctttcaaaaaatgtgaaagattttataattttccactatatttccaaccctctaaagccttccctt 1132784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 32858968 - 32859061
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccctt 255  Q
    |||||||||| ||||| |||||| | ||||||||||||||||||||||||||||| |||||   ||||||||| ||| || ||||||||||||||    
T  32858968 attaatttatcattctctaaaaatt-actctttcaaaaaatgtgaaagattttaccattttcccctatatttccaaccctccaaagccttccctt 32859061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 15499242 - 15499149
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt-tctatatttcaaactcttcaaagccttccct 254  Q
    |||| ||||| ||||| |||||| | ||| |||||||||||||||||||||||||||||||| | |||||||| |||| | ||||| |||||||    
T  15499242 attattttatcattctctaaaaatttactatttcaaaaaatgtgaaagattttactatttttctatatatttccaactttccaaagtcttccct 15499149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 4247255 - 4247326
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt-tctatattt 232  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| ||||||||||||| |||||| |||||||||    
T  4247255 attaatttatcattctctaaaaaattactctttaaaaaaatatgaaagattttaccatttttctctatattt 4247326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 278
Target Start/End: Original strand, 36598392 - 36598497
Alignment:
Q  173 attctataaaaaatcactctttcaaaaaatgtgaaagattttactattttttctatatttcaaactcttcaaagccttccctttctctctactccaaact 272  Q
    ||||| |||||||  ||| ||||||||||||||||||||||||| ||||||   ||||||| ||| |||||||| |||| ||| | |||  |||||||||    
T  36598392 attctttaaaaaactactatttcaaaaaatgtgaaagattttaccatttttctcatatttccaacccttcaaagtcttctcttcccctcccctccaaact 36598491  T
Q  273 ctcaaa 278  Q
    | ||||    
T  36598492 cccaaa 36598497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 23568201 - 23568261
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||||||||| |||||| ||||| | | |||||||||||||| ||||||||||||||||||    
T  23568201 attaatttatcattctaaaaaaagttattctttcaaaaaatgcgaaagattttactatttt 23568261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 43273945 - 43274015
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttacta-ttttttctatatttc 233  Q
    |||||||||| ||||| |||||||| ||| ||  ||||||| ||||||||||||||| |||||||||||||||    
T  43273945 attaatttatcattctttaaaaaattactttt--aaaaaatatgaaagattttactatttttttctatatttc 43274015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 3334002 - 3334053
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    |||||||||| ||||| |||||||  |||||| |||||||||||||||||||    
T  3334002 attaatttatcattctctaaaaaaatactcttccaaaaaatgtgaaagattt 3334053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 35283225 - 35283276
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    |||||||||| | |||| ||||||  ||||||||||||||||||||||||||    
T  35283225 attaatttatcactctaaaaaaaaatactctttcaaaaaatgtgaaagattt 35283276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 53620359 - 53620410
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    |||||||||| ||||| |||||||  |||||||||||||||||| |||||||    
T  53620359 attaatttatcattctctaaaaaaatactctttcaaaaaatgtgtaagattt 53620410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 2984029 - 2984090
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt 223  Q
    |||||| ||| ||||| |||||||| ||||||||||||||||  |||| |||||| ||||||    
T  2984029 attaatgtatcattctctaaaaaattactctttcaaaaaatggaaaagtttttaccattttt 2984090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 50201706 - 50201767
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttt 223  Q
    |||||||||  ||||| |||||||  ||||||||||||| ||||||||||||| | ||||||    
T  50201706 attaatttaccattctctaaaaaaatactctttcaaaaattgtgaaagatttttcaattttt 50201767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 37457190 - 37457226
Alignment:
Q  188 actctttcaaaaaatgtgaaagattttactatttttt 224  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  37457190 actctttcaaaaaatgtgaaatattttaccatttttt 37457226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 38401862 - 38401810
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatttt 214  Q
    |||| ||||| | ||| ||||||| |||||||| |||||||||||||||||||    
T  38401862 attagtttatcactctttaaaaaaacactcttttaaaaaatgtgaaagatttt 38401810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 54089380 - 54089336
Alignment:
Q  179 taaaaaatcactctttcaaaaaatgtgaaagattttactattttt 223  Q
    |||||||| ||||||||||||||| ||||| ||||||| ||||||    
T  54089380 taaaaaattactctttcaaaaaatttgaaacattttaccattttt 54089336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 7398724 - 7398595
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactattttttc-tatatttcaaactcttcaaagccttccctttctct 260  Q
    |||||||||| ||||| |||||||| | |||| |||||||||||||   |||||| ||||| || |||||||| |||||||||||| ||| | |||| ||    
T  7398724 attaatttatcattctctaaaaaattagtcttacaaaaaatgtgaatttttttaccattttctcctatatttccaactcttcaaagtctttcatttcact 7398625  T
Q  261 ctactccaaactctcaaataaagtcttaga 290  Q
    |  ||||||||| ||||| |||| ||||||    
T  7398624 cccctccaaactttcaaacaaagccttaga 7398595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 2561256 - 2561311
Alignment:
Q  179 taaaaaatcactctttcaaaaaatgtgaaagattttactattttt-tctatatttc 233  Q
    |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  2561256 taaaaaatcactctttcaaaaaatgtgaaagaatttaccatttttctctatatttc 2561311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 19389771 - 19389711
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||||||||| ||||| |||||||| | ||||||||||| ||||||||||||||| |||||    
T  19389771 attaatttatcattctctaaaaaattaatctttcaaaaattgtgaaagattttaccatttt 19389711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 28523756 - 28523808
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatttt 214  Q
    |||||||||| ||||| |||||||||| ||||||||||||| |||||||||||    
T  28523756 attaatttatcattctttaaaaaatcattctttcaaaaaatatgaaagatttt 28523808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 17668077 - 17668026
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    |||||||||| ||||  |||||||| ||||||||||||||||||||||||||    
T  17668077 attaatttatcattccctaaaaaattactctttcaaaaaatgtgaaagattt 17668026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 9684734 - 9684640
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccctt 255  Q
    |||||||||| ||| | |||||||| |||||||||||||||||| |||||||| | |||||   ||||||||| ||| || | ||||||||||||    
T  9684734 attaatttatcattttctaaaaaattactctttcaaaaaatgtggaagattttcccattttcccctatatttccaaccctcctaagccttccctt 9684640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 3924799 - 3924751
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaaga 210  Q
    |||||||||| ||||| |||||||| |||||| ||||||||||||||||    
T  3924799 attaatttatcattctctaaaaaattactcttccaaaaaatgtgaaaga 3924751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 33682510 - 33682582
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttc 233  Q
    |||||||| | ||| | |||||||| ||||| | ||||||||||||||||||||| ||||| |||||||||||    
T  33682510 attaatttttcattttctaaaaaattactctataaaaaaatgtgaaagattttaccattttcttctatatttc 33682582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 35042342 - 35042402
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||||||||| ||||| ||||||||   ||||||||||||| ||||||||||||| |||||    
T  35042342 attaatttatcattctctaaaaaatttatctttcaaaaaatatgaaagattttaccatttt 35042402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 4841652 - 4841601
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    |||||||||| | |||||||||||  ||||||| ||||||||||||||||||    
T  4841652 attaatttatcactctataaaaaaatactctttaaaaaaatgtgaaagattt 4841601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 35704752 - 35704822
Alignment:
Q  164 taatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttttt-ctatatttc 233  Q
    |||||||| ||||| |||||||  ||  ||||||||||||||||||||||  ||||||||| |||||||||    
T  35704752 taatttatcattctctaaaaaaatacattttcaaaaaatgtgaaagatttctctattttttcctatatttc 35704822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 6816378 - 6816455
Alignment:
Q  179 taaaaaatcactctttcaaaaaatgtgaaagattttactattttttc-tatatttcaaactcttcaaagccttccctt 255  Q
    |||||||  ||||||||||||||||||||||||||||  ||||| || |||||||| ||| ||  ||||| |||||||    
T  6816378 taaaaaacgactctttcaaaaaatgtgaaagattttagcattttgtcttatatttccaaccctcgaaagcattccctt 6816455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 31632976 - 31633024
Alignment:
Q  166 atttattattctataaaaaatcactctttcaaaaaatgtgaaagatttt 214  Q
    |||||| ||||| || ||||  |||||||||||||||||||||||||||    
T  31632976 atttatcattctctacaaaaatactctttcaaaaaatgtgaaagatttt 31633024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 43496646 - 43496690
Alignment:
Q  180 aaaaaatcactctttcaaaaaatgtgaaagattttactatttttt 224  Q
    |||||||  |||||||||||||| ||||||||||| |||||||||    
T  43496646 aaaaaattgctctttcaaaaaatatgaaagatttttctatttttt 43496690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 37388418 - 37388477
Alignment:
Q  163 ttaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    ||||||||| ||||| |||||| | ||||||||||||||||||||||||||||| |||||    
T  37388418 ttaatttatcattctctaaaaatttactctttcaaaaaatgtgaaagattttaccatttt 37388477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 3394099 - 3394159
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||||||||| ||||| | |||||| |||||||||||||||||| |||||||||| |||||    
T  3394099 attaatttatcattctcttaaaaattactctttcaaaaaatgtgcaagattttaccatttt 3394159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 13258624 - 13258675
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||||||||    
T  13258624 attaatttatcattctctaaaaaaatactctttcaaaaaatgtgaaagattt 13258675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 13537480 - 13537550
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttac--tattttttctatat 230  Q
    |||||||||||||||| |||||||| ||||||||||||||  | |||||||||||  |||||||| |||||    
T  13537480 attaatttattattctctaaaaaattactctttcaaaaaaattaaaagattttaccatattttttttatat 13537550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 13627028 - 13627098
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttac--tattttttctatat 230  Q
    |||||||||||||||| |||||||| ||||||||||||||  | |||||||||||  |||||||| |||||    
T  13627028 attaatttattattctctaaaaaattactctttcaaaaaaattaaaagattttaccatattttttttatat 13627098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 1839763 - 1839712
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattt 213  Q
    |||||||||| | ||| |||||||  ||||||||||||||||||||||||||    
T  1839763 attaatttatcactctctaaaaaaatactctttcaaaaaatgtgaaagattt 1839712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 5941220 - 5941255
Alignment:
Q  180 aaaaaatcactctttcaaaaaatgtgaaagatttta 215  Q
    ||||||| ||||||||||||||||||||||||||||    
T  5941220 aaaaaattactctttcaaaaaatgtgaaagatttta 5941255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 15108206 - 15108155
Alignment:
Q  163 ttaatttattattctataaaaaatcactctttcaaaaaatgtgaaagatttt 214  Q
    ||||||||| ||||| |||||||| | ||||||||||||| |||||||||||    
T  15108206 ttaatttatcattctctaaaaaattattctttcaaaaaatatgaaagatttt 15108155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 4429587 - 4429621
Alignment:
Q  188 actctttcaaaaaatgtgaaagattttactatttt 222  Q
    ||||||||||||||||||||||||||||| |||||    
T  4429587 actctttcaaaaaatgtgaaagattttaccatttt 4429621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 39194069 - 39194121
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaa-tgtgaaagattt 213  Q
    |||| ||||| ||||| ||||||| ||||||||||||||| ||||||||||||    
T  39194069 attagtttatcattctctaaaaaaacactctttcaaaaaagtgtgaaagattt 39194121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 16329517 - 16329602
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaag 246  Q
    |||||||||| ||||| |||||||| | ||||||||||||||| ||||||||||  ||||| | ||||||||| ||| ||||||||    
T  16329517 attaatttatcattctctaaaaaattattctttcaaaaaatgtaaaagattttatcattttctcctatatttccaacccttcaaag 16329602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 13120365 - 13120301
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaa-aaaatgtgaaagattttactattttttc 225  Q
    |||||||||| ||||| |||||||| |||||||||| ||||||| |||||||||  |||||||||    
T  13120365 attaatttatcattctctaaaaaattactctttcaaaaaaatgtaaaagatttttttattttttc 13120301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 34557116 - 34557024
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt-ttctatatttcaaactcttcaaagccttccc 253  Q
    |||||||||  ||||| |||||| | | |||||||||  |||||||||||||||| ||||| | ||||||||| |||||| ||||| ||||||    
T  34557116 attaatttaccattctctaaaaagttattctttcaaactatgtgaaagattttaccattttctcctatatttccaactctccaaagtcttccc 34557024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 24379774 - 24379865
Alignment:
Q  196 aaaaaatgtgaaagattttactattttt-tctatatttcaaactcttcaaagccttccctttctctctactccaaactctcaaataaagtct 286  Q
    ||||||| ||||||||||||||||||||  ||||||||  ||| || ||||| |||| ||| |||||  |||||||||| |||| |||||||    
T  24379774 aaaaaatatgaaagattttactatttttccctatattttcaaccctccaaagtcttctcttcctctcacctccaaactcccaaacaaagtct 24379865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 547 - 487
Alignment:
Q  162 attaatttattattctataaaaaatcactctttcaaaaaatgtgaaagattttactatttt 222  Q
    |||||||||  ||||| |||||| | ||||||||||||||||||||| ||||||| |||||    
T  547 attaatttaacattctctaaaaatttactctttcaaaaaatgtgaaatattttaccatttt 487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 250309 - 250353
Alignment:
Q  37 ggaatagaggagagtgacgacgttgtgattgactgagatggtgac 81  Q
    ||||||| ||||||| ||| ||||||||||| |||||||||||||    
T  250309 ggaataggggagagttacggcgttgtgattggctgagatggtgac 250353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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