View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19372_low_3 (Length: 656)

Name: NF19372_low_3
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19372_low_3
NF19372_low_3
[»] chr4 (15 HSPs)
chr4 (19-504)||(3950995-3951483)
chr4 (19-504)||(4027393-4027882)
chr4 (548-640)||(3950859-3950951)
chr4 (323-497)||(4005234-4005409)
chr4 (341-433)||(4215801-4215893)
chr4 (342-495)||(4013500-4013653)
chr4 (370-497)||(3991219-3991348)
chr4 (568-628)||(3961099-3961159)
chr4 (564-620)||(4027943-4027999)
chr4 (556-640)||(4215927-4216011)
chr4 (216-278)||(4013305-4013367)
chr4 (560-640)||(3796807-3796887)
chr4 (568-628)||(4014324-4014384)
chr4 (568-617)||(4221238-4221287)
chr4 (19-119)||(4013094-4013193)
[»] chr5 (1 HSPs)
chr5 (344-497)||(13400438-13400591)


Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Complemental strand, 3951483 - 3950995
Alignment:
Q  19 aggcaattctaagttggtaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa 118  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3951483 aggcaactctaagttgttaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa 3951384  T
Q  119 ggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattgtatatatggaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3951383 ggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattatatatatggaa 3951284  T
Q  219 g---gtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaactgaaaactataattacatactgtctcgttgataaatcg 315  Q
    |   |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3951283 gaaggtcacaaaaaagtttttgtcttactttaaagctctaacaatatctacaaatatagaactgaaaactataattacatactgtctcgttgataaatcg 3951184  T
Q  316 aaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3951183 aaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccat 3951084  T
Q  416 tggattggaacaagtgcactacgaacaatctttctgtctctagaaccttgaacgtcacaataagggaaacacaaggttattaacggaac 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3951083 tggattggaacaagtgcactacgaacaatctttctgtctctagaaccttgaacgtcacaataagggaaacacaaggttattaacggaac 3950995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 19 - 504
Target Start/End: Original strand, 4027393 - 4027882
Alignment:
Q  19 aggcaattctaagttggtaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa 118  Q
    |||||||||||||||| ||||||||||||||| ||| | || | | |||||| || |||||| || ||  || |||||||||||||||||||||| ||||    
T  4027393 aggcaattctaagttgttaaaactcataaaagcttattagtcatagtccctctgacctacacatgaga--aatttttcaagtcccaattcttgacattaa 4027490  T
Q  119 ggaacaaaatga--gtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattgtatatatgg 216  Q
    ||| ||||||||  |||| ||||||| |||||| | ||| | ||||||  |||||||||| | ||||| |||||  ||||||||||||| | ||||| ||    
T  4027491 ggaccaaaatgatagtttgctctaatatctgcaaattaa-tatttagttctattatacaatgatttctacataa--gtgtgcaggacatagaatataagg 4027587  T
Q  217 aaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact--------gaaaactataattacatactgtctcgttga 308  Q
    ||||||||||||| ||||| ||||||||| |||||||  |||||||||||||||||||| ||         ||||| || |||||||||||| || ||||    
T  4027588 aaggtcacaaaaaggttttggtcttacttcacagctcatacaatatctacaaatatagagctaagaagtaaaaaaccatgattacatactgtttcattga 4027687  T
Q  309 taaatcgaaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaat 408  Q
     |||||  ||| |||||| || ||||| ||| |||||||| ||| || |||||||||    |||||||||| ||| ||||||| ||||  |||  |||||    
T  4027688 aaaatcttaaagtttcaggatcaattcgtaa-cacaaattcgaatttaataagcaga--cattacagcataaattatttgagaagctctggaaaacaaat 4027784  T
Q  409 atgccattggattggaacaagtgcactacgaacaatctttct--gtctctagaaccttgaacgtcacaataagggaaacacaaggttattaacggaac 504  Q
    | ||||||| |||||||||| ||||||  |||| ||||||||  |||||||| |||| |||  | |||||||||||||||||||  ||||| ||||||    
T  4027785 acgccattgaattggaacaaatgcactctgaacgatctttcttcgtctctaggacctcgaaaattacaataagggaaacacaagaatattaccggaac 4027882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 548 - 640
Target Start/End: Complemental strand, 3950951 - 3950859
Alignment:
Q  548 taacggtcatagcaataagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttctcccatattgaagaagcaat 640  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3950951 taacggtcatagcaataagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttctcccatattgaagaagcaat 3950859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 323 - 497
Target Start/End: Original strand, 4005234 - 4005409
Alignment:
Q  323 tcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattg 422  Q
    |||||||||||||||||| ||||||| ||| || |||| ||||| | ||||||||||||||  |||||| | ||||||||  ||||||||||||| | ||    
T  4005234 tcagcattaattcataac-acaaattcgaatttaataaacagagcaattacagcatatattagttgagaagttccagaagataaatatgccattgaactg 4005332  T
Q  423 gaacaagtgcactacgaacaatctttct--gtctctagaaccttgaacgtcacaataagggaaacacaaggttatta 497  Q
    |||||||||||||  |||||||||||||  |||||||||||||||||   | |||||||||||||||||||||||||    
T  4005333 gaacaagtgcactctgaacaatctttcttcgtctctagaaccttgaataacgcaataagggaaacacaaggttatta 4005409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 341 - 433
Target Start/End: Original strand, 4215801 - 4215893
Alignment:
Q  341 cacaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgca 433  Q
    |||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| ||||||||||||||    
T  4215801 cacaaattagaaattgataatcagagtatttacagcagatattgtttgagaggctccagaagacaaatatgacattggtttggaacaagtgca 4215893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 342 - 495
Target Start/End: Original strand, 4013500 - 4013653
Alignment:
Q  342 acaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgcactacgaac 441  Q
    ||||||| |||||  ||||||||||   |||||||||||||| ||||||| ||||| |||| |||||| ||||||| |||||||||| | |||   ||||    
T  4013500 acaaattcgaaatcaataagcagaga--ttacagcatatattatttgagaagctccggaagacaaatacgccattgaattggaacaatttcacacggaac 4013597  T
Q  442 aatctttct--gtctctagaaccttgaacgtcacaataagggaaacacaaggttat 495  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||||||| ||||    
T  4013598 aatctttcttcgtctctagaaccttgaacatcacaataagggaaacacaagattat 4013653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 370 - 497
Target Start/End: Original strand, 3991219 - 3991348
Alignment:
Q  370 ttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgcactacgaacaatctttct--gtctctagaaccttgaa 467  Q
    |||||||||||||| ||   || ||||| |||| |||||  ||||||| |||||||||| | ||||  |||||||||||||  |||| ||||||||||||    
T  3991219 ttacagcatatattattgatgaagctccggaagacaaatgcgccattgaattggaacaacttcactctgaacaatctttcttcgtctgtagaaccttgaa 3991318  T
Q  468 cgtcacaataagggaaacacaaggttatta 497  Q
      |  |||||||||||||||||||||||||    
T  3991319 tatatcaataagggaaacacaaggttatta 3991348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 568 - 628
Target Start/End: Complemental strand, 3961159 - 3961099
Alignment:
Q  568 aagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttctcccatat 628  Q
    |||||||| || |||||||||| ||||||||||||||||||| |||||||||||| |||||    
T  3961159 aagcaattactaaccttcaatgatttggctgctagagatctgtttcaactttctctcatat 3961099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 564 - 620
Target Start/End: Original strand, 4027943 - 4027999
Alignment:
Q  564 aagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttc 620  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||    
T  4027943 aagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttc 4027999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 556 - 640
Target Start/End: Original strand, 4215927 - 4216011
Alignment:
Q  556 atagcaataagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttctcccatattgaagaagcaat 640  Q
    ||||| |||||||||| ||  | || |||||||| |||||| ||||||||||||||||||||||||  ||||| |||||||||||    
T  4215927 atagccataagaaagctataacggaacttcaatgctttggccgctagagatctgattcaactttctatcatatggaagaagcaat 4216011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 4013305 - 4013367
Alignment:
Q  216 gaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact 278  Q
    |||||| ||||||| ||||| |||||||| ||||||||  |||||||||||||||||||||||    
T  4013305 gaaggtaacaaaaatgttttggtcttactctacagctcatacaatatctacaaatatagaact 4013367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 560 - 640
Target Start/End: Original strand, 3796807 - 3796887
Alignment:
Q  560 caataagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttctcccatattgaagaagcaat 640  Q
    |||||||||||| ||  | || |||||||| |||||| ||||| ||||||||||||||||||  ||||| |||||||||||    
T  3796807 caataagaaagctataacggaacttcaatgctttggccgctagtgatctgattcaactttctatcatatggaagaagcaat 3796887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 628
Target Start/End: Original strand, 4014324 - 4014384
Alignment:
Q  568 aagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttctcccatat 628  Q
    ||||||||||  |||||||||| ||| ||||||| ||||||||||||| |||||| |||||    
T  4014324 aagcaatttcaaaccttcaatgctttagctgctatagatctgattcaagtttctctcatat 4014384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 617
Target Start/End: Original strand, 4221238 - 4221287
Alignment:
Q  568 aagcaatttctgaccttcaatgttttggctgctagagatctgattcaact 617  Q
    |||||||| |||||||| |||| ||||  |||||||||||||||||||||    
T  4221238 aagcaattactgaccttaaatgctttgtttgctagagatctgattcaact 4221287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 4013094 - 4013193
Alignment:
Q  19 aggcaattctaagttggtaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa 118  Q
    ||||||||||||||   ||||||||||||||| ||| | || | |||| |||  |||||||| |||||  |  ||||||||||||||||| |||||||||    
T  4013094 aggcaattctaagtcattaaaactcataaaagcttattagtcataatctctcaaagctacacatgtgagcattttttcaagtcccaattc-tgactttaa 4013192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 344 - 497
Target Start/End: Original strand, 13400438 - 13400591
Alignment:
Q  344 aaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgcactacgaacaa 443  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||  || ||| ||||||    
T  13400438 aaatttgaaattgataagcagagtatttacagcatatattgttggagaggctccagaagaaaaatatgccattggattggaacaa--gcgctatgaacaa 13400535  T
Q  444 tctttc--tgtctctagaaccttgaacgtcacaataagggaaacacaaggttatta 497  Q
    ||||||  |||||| |||||||||||| || |||||||||||||||||||||||||    
T  13400536 tctttctttgtctcaagaaccttgaacatcgcaataagggaaacacaaggttatta 13400591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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