View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_low_31 (Length: 267)
Name: NF19372_low_31
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 33483738 - 33483931
Alignment:
| Q |
15 |
cacaattcatagtttttatatgtannnnnnnaatgataaaatactaatataattagtttatatgtatttgttaaaatttatcataaaaacagctgtatta |
114 |
Q |
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| T |
33483738 |
cacaattcatagtttttatatgtatttttttaatgataaa-tactaatataattagtttatatgtatttgttaaaatttatcataaaaacagctgtatta |
33483836 |
T |
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| Q |
115 |
tgattataatttggaagtttttaaaccaaacttaatcatttcaacaatgtattttgttatcgacaatgatacatgtacatatcatatttcccaacaccaa |
214 |
Q |
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| T |
33483837 |
tgattataatttggaagtttctaaatcaaa-ttaatcatt---------ttttttgttatcaacaatgatacatgtacatctcatgtttcccaacaccaa |
33483926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 33496816 - 33496920
Alignment:
| Q |
53 |
aaatactaatataattagtttatatgtatttgttaaaatttatcataaaaacagctgtattatgattataatttggaagtttttaaaccaaacttaatca |
152 |
Q |
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| T |
33496816 |
aaatactaatataattgatttatatgtatttgttaagattcatcagaaaaacaactgtcttatgatcataatttggaagtttctaaaccagac-taatca |
33496914 |
T |
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| Q |
153 |
tttcaa |
158 |
Q |
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| T |
33496915 |
tttcaa |
33496920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 33484302 - 33484405
Alignment:
| Q |
53 |
aaatactaatataattagtttatatgtatttgttaaaatttatcataaaaacagctgtattatgattataatttggaagtttttaaaccaaacttaatca |
152 |
Q |
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| T |
33484302 |
aaatactaatataattagtttctc-gtatttgtgaagatttatcgtaaaaacagctgcattatgattatattttggaagtttatgaaccaaac-taatca |
33484399 |
T |
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| Q |
153 |
tttcaa |
158 |
Q |
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|||||| |
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| T |
33484400 |
tttcaa |
33484405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 33496585 - 33496621
Alignment:
| Q |
167 |
tttgttatcgacaatgatacatgtacatatcatattt |
203 |
Q |
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| T |
33496585 |
tttgttatcgacaatgatacatgtatatctcatattt |
33496621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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