View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_low_36 (Length: 249)
Name: NF19372_low_36
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 47796929 - 47796692
Alignment:
| Q |
1 |
ctaaaagataaggaaaataagctgaataagtcccaaaaagaccgataaatattctctagttataaccagaccaaggggccatgctaggaccttacttgct |
100 |
Q |
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| T |
47796929 |
ctaaaagataaggaaaataagccgaataagtcccaaaaagaccgataaatattctctagttatacccagaccaaggggccatgctaggaccttacttgct |
47796830 |
T |
|
| Q |
101 |
ggctcttagtcaggacctaaactaaccaaaaaggcagcagaagaaggcttccctaaaagggactacatcctctagcgacttccatcctgatttaatgtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47796829 |
ggctcttagtcaggacctaaactaaccaaaaaggcagcagaagaaggcttccctaaaagggactacatcctctagcgacttccatcctgatttaatgtcc |
47796730 |
T |
|
| Q |
201 |
tgttctcctttcagattattattatgtattttgatatt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
47796729 |
tgttctcctttcagattattattatgtattttgatatt |
47796692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 47802599 - 47802478
Alignment:
| Q |
1 |
ctaaaagataaggaaaa-taagctgaataagtcccaaaaagaccgataaatattctctagttat------aaccagaccaaggggccatgctaggacctt |
93 |
Q |
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||||||||||||||||| ||||| ||| |||| |||||||| | |||||||||||||||||||| | |||||||||||||||| |||| ||||| |
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| T |
47802599 |
ctaaaagataaggaaaaataagccgaaaaagtgccaaaaaggcagataaatattctctagttatacccagacccagaccaaggggccagtctagcacctt |
47802500 |
T |
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| Q |
94 |
acttgctggctcttagtcagga |
115 |
Q |
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|||| |||||||||| |||||| |
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| T |
47802499 |
acttactggctcttactcagga |
47802478 |
T |
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