View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19372_low_38 (Length: 241)

Name: NF19372_low_38
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19372_low_38
NF19372_low_38
[»] chr4 (2 HSPs)
chr4 (1-221)||(48430869-48431093)
chr4 (7-46)||(38648655-38648694)
[»] chr3 (3 HSPs)
chr3 (1-145)||(53287786-53287926)
chr3 (63-144)||(52545659-52545740)
chr3 (182-218)||(52806042-52806078)
[»] chr6 (9 HSPs)
chr6 (7-97)||(34114493-34114579)
chr6 (7-45)||(34135862-34135900)
chr6 (1-145)||(11841887-11842027)
chr6 (7-45)||(34138860-34138898)
chr6 (11-43)||(34091888-34091920)
chr6 (7-39)||(34168325-34168357)
chr6 (7-45)||(34130235-34130272)
chr6 (10-43)||(34106729-34106762)
chr6 (7-39)||(34922568-34922600)
[»] chr1 (5 HSPs)
chr1 (1-42)||(23617708-23617749)
chr1 (1-42)||(23649049-23649090)
chr1 (9-46)||(23617991-23618028)
chr1 (9-46)||(23649333-23649370)
chr1 (9-46)||(23734960-23734997)
[»] scaffold0620 (1 HSPs)
scaffold0620 (11-43)||(7222-7254)
[»] chr2 (4 HSPs)
chr2 (7-40)||(8144014-8144047)
chr2 (7-40)||(8150292-8150325)
chr2 (7-40)||(8154916-8154949)
chr2 (7-40)||(8176674-8176707)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 48430869 - 48431093
Alignment:
Q  1 atgcataaagaaactaaaattgtgaaacttgaatcaaaagcattgccaaatgccctatcccgtaaactttgttaacatttgctgaaaaacttg----cct 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    
T  48430869 atgcataaagaaactaaaattgtgaaacttgaatcaaaagcattgccaaatgccctatcccgtaaactttgttaacatttgctgaaaaacttgcttgcct 48430968  T
Q  97 cggtttcttgatcacgtgggttgttagtcaaagttgaagatttagccctcaaatggccagatttagaagttgaatgaccggaaaaagccctctcatagcc 196  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  48430969 cggtttcttgatcatgtgggttgttagtcaaagttgaagatttagccctcaaatggccagacttagcagttgaatgaccggaaaaagccctctcatagcc 48431068  T
Q  197 gtaccaataataaggaagaggcttc 221  Q
    |||||||||||||||||||||||||    
T  48431069 gtaccaataataaggaagaggcttc 48431093  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 38648655 - 38648694
Alignment:
Q  7 aaagaaactaaaattgtgaaacttgaatcaaaagcattgc 46  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38648655 aaagaaactaaaattgtgaaacttgaatcaaaagcattgc 38648694  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 53287926 - 53287786
Alignment:
Q  1 atgcataaagaaactaaaattgtgaaacttgaatcaaaagcattgccaaatgccctatcccgtaaactttgttaacatttgctgaaaaa-cttgcctcgg 99  Q
    ||||| |||||||| | |||||||||||| |||||||||||||||| ||  |||| ||     |||||||| |||||||||| |||||| ||||||| ||    
T  53287926 atgcacaaagaaacgagaattgtgaaactagaatcaaaagcattgctaacggccccat-----aaactttggtaacatttgcagaaaaaacttgcctggg 53287832  T
Q  100 tttcttgatcacgtgggttgttagtcaaagttgaagatttagccct 145  Q
    ||||||||||| || ||||||  ||  ||| |||||||||| ||||    
T  53287831 tttcttgatcaggtaggttgtgggtagaagctgaagatttaaccct 53287786  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 52545740 - 52545659
Alignment:
Q  63 taaactttgttaacatttgctgaaaaacttgcctcggtttcttgatcacgtgggttgttagtcaaagttgaagatttagccc 144  Q
    |||||||||||||||| |||  |||||||||| | |||||||| ||||||| |||||  |||  | ||||||||||||||||    
T  52545740 taaactttgttaacatatgcaaaaaaacttgcttgggtttcttaatcacgtaggttgacagtttacgttgaagatttagccc 52545659  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 52806042 - 52806078
Alignment:
Q  182 agccctctcatagccgtaccaataataaggaagaggc 218  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  52806042 agccctcacatagccggaccaataataaggaagaggc 52806078  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 34114579 - 34114493
Alignment:
Q  7 aaagaaactaaaattgtgaaacttgaatcaaaagcattgccaaa-tgccctatcccgtaaactttgttaacatttgctgaaaaacttgcctc 97  Q
    ||||||||||||||||||||||||||| ||||| |||| | ||| |||||||     |||||||||||||||||| | ||||||||||||||    
T  34114579 aaagaaactaaaattgtgaaacttgaaacaaaaacattactaaagtgcccta-----taaactttgttaacatttccagaaaaacttgcctc 34114493  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 34135862 - 34135900
Alignment:
Q  7 aaagaaactaaaattgtgaaacttgaatcaaaagcattg 45  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34135862 aaagaaactaaaattgtgaaacttgaatcaaaagcattg 34135900  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 11841887 - 11842027
Alignment:
Q  1 atgcataaagaaactaaaattgtgaaacttgaatcaaaagcattgccaaatgccctatcccgtaaactttgttaacatttgctg-aaaaacttgcctcgg 99  Q
    ||||| |||||||| | |||||||||||| |||||||||||||||| ||  ||     ||| ||||| ||| |||||||||| | |||||||||||| ||    
T  11841887 atgcacaaagaaacgagaattgtgaaactagaatcaaaagcattgctaacggc-----cccataaacattggtaacatttgcagaaaaaacttgcctggg 11841981  T
Q  100 tttcttgatcacgtgggttgttagtcaaagttgaagatttagccct 145  Q
    ||||||||||| || ||||||  ||  ||| |||||||||| ||||    
T  11841982 tttcttgatcaggtaggttgtgggtagaagctgaagatttaaccct 11842027  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 34138860 - 34138898
Alignment:
Q  7 aaagaaactaaaattgtgaaacttgaatcaaaagcattg 45  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  34138860 aaagaaactaaaactgtgaaacttgaatcaaaagcattg 34138898  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 34091920 - 34091888
Alignment:
Q  11 aaactaaaattgtgaaacttgaatcaaaagcat 43  Q
    |||||||||||||||||||||||||||||||||    
T  34091920 aaactaaaattgtgaaacttgaatcaaaagcat 34091888  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 34168357 - 34168325
Alignment:
Q  7 aaagaaactaaaattgtgaaacttgaatcaaaa 39  Q
    |||||||||||||||||||||||||||||||||    
T  34168357 aaagaaactaaaattgtgaaacttgaatcaaaa 34168325  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 34130235 - 34130272
Alignment:
Q  7 aaagaaactaaaattgtgaaacttgaatcaaaagcattg 45  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  34130235 aaagaaactaaa-ttgtgaaacttgaatcaaaagcattg 34130272  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 34106762 - 34106729
Alignment:
Q  10 gaaactaaaattgtgaaacttgaatcaaaagcat 43  Q
    |||||||||||| |||||||||||||||||||||    
T  34106762 gaaactaaaattctgaaacttgaatcaaaagcat 34106729  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 34922568 - 34922600
Alignment:
Q  7 aaagaaactaaaattgtgaaacttgaatcaaaa 39  Q
    |||||||||||||||||||||||||||| ||||    
T  34922568 aaagaaactaaaattgtgaaacttgaataaaaa 34922600  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23617708 - 23617749
Alignment:
Q  1 atgcataaagaaactaaaattgtgaaacttgaatcaaaagca 42  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  23617708 atgcatatagaaactaaaattgagaaacttgaatcaaaagca 23617749  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23649049 - 23649090
Alignment:
Q  1 atgcataaagaaactaaaattgtgaaacttgaatcaaaagca 42  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  23649049 atgcatatagaaactaaaattgagaaacttgaatcaaaagca 23649090  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 23617991 - 23618028
Alignment:
Q  9 agaaactaaaattgtgaaacttgaatcaaaagcattgc 46  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  23617991 agaaactataattgcgaaacttgaatcaaaagcattgc 23618028  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 23649333 - 23649370
Alignment:
Q  9 agaaactaaaattgtgaaacttgaatcaaaagcattgc 46  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  23649333 agaaactataattgagaaacttgaatcaaaagcattgc 23649370  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 23734960 - 23734997
Alignment:
Q  9 agaaactaaaattgtgaaacttgaatcaaaagcattgc 46  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  23734960 agaaactataattgcgaaacttgaatcaaaagcattgc 23734997  T

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Target: scaffold0620 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 7254 - 7222
Alignment:
Q  11 aaactaaaattgtgaaacttgaatcaaaagcat 43  Q
    |||||||||||||||||||||||||||||||||    
T  7254 aaactaaaattgtgaaacttgaatcaaaagcat 7222  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 8144047 - 8144014
Alignment:
Q  7 aaagaaactaaaattgtgaaacttgaatcaaaag 40  Q
    ||||||||||||||||||||| ||||||||||||    
T  8144047 aaagaaactaaaattgtgaaatttgaatcaaaag 8144014  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 8150325 - 8150292
Alignment:
Q  7 aaagaaactaaaattgtgaaacttgaatcaaaag 40  Q
    ||||||||||||||||||||| ||||||||||||    
T  8150325 aaagaaactaaaattgtgaaatttgaatcaaaag 8150292  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 8154949 - 8154916
Alignment:
Q  7 aaagaaactaaaattgtgaaacttgaatcaaaag 40  Q
    ||||||||||||||||||||| ||||||||||||    
T  8154949 aaagaaactaaaattgtgaaatttgaatcaaaag 8154916  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 8176707 - 8176674
Alignment:
Q  7 aaagaaactaaaattgtgaaacttgaatcaaaag 40  Q
    ||||||||||||||||||||| ||||||||||||    
T  8176707 aaagaaactaaaattgtgaaatttgaatcaaaag 8176674  T

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