View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_low_39 (Length: 238)
Name: NF19372_low_39
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_low_39 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 52 - 238
Target Start/End: Complemental strand, 21123754 - 21123569
Alignment:
| Q |
52 |
taaatcgtattatcaaaatattcacacaatttatatcatcgccaactcctaacttcatttcaataagaagaatannnnnnnn-gaagaagataaattaat |
150 |
Q |
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| T |
21123754 |
taaatcgtattatcaaaatattcacacaatttatatcatcgccaactcctaacttcatttcaataagaagaatatttttttttgaagaagataaattaat |
21123655 |
T |
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| Q |
151 |
ccccc-aaattataataagaagaatattaatttaccttgaagagttggaacgaggaagcgaatagtatccagcatggtgaccaagatcc |
238 |
Q |
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| T |
21123654 |
ccccccaaattataataagaa---tattaatttaccttgaagagttggaacgaggaagcgaatagtatccagcatggtgaccaagatcc |
21123569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 21143549 - 21143493
Alignment:
| Q |
181 |
ttaccttgaagagttggaacgaggaagcgaatagtatccagcatggtgaccaagatc |
237 |
Q |
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| T |
21143549 |
ttaccttgcggatttggaacgaggaagcgagtagtatccggcatgatgaccaagatc |
21143493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 21149347 - 21149305
Alignment:
| Q |
194 |
ttggaacgaggaagcgaatagtatccagcatggtgaccaagat |
236 |
Q |
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| T |
21149347 |
ttggaatgaggaagtgaatagtatccggcatggtgaccaagat |
21149305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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