View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19372_low_4 (Length: 634)

Name: NF19372_low_4
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19372_low_4
NF19372_low_4
[»] chr4 (8 HSPs)
chr4 (6-634)||(2018742-2019368)
chr4 (215-425)||(2035769-2035978)
chr4 (213-431)||(1990012-1990230)
chr4 (227-431)||(2021574-2021778)
chr4 (524-621)||(1989679-1989776)
chr4 (516-621)||(2021348-2021452)
chr4 (498-542)||(1989871-1989915)
chr4 (61-108)||(2021893-2021940)
[»] chr2 (3 HSPs)
chr2 (258-371)||(40911156-40911269)
chr2 (258-371)||(44968718-44968831)
chr2 (258-371)||(44983033-44983146)


Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 6 - 634
Target Start/End: Complemental strand, 2019368 - 2018742
Alignment:
Q  6 gggaatttgaatattcttcattgatcgtcgtttagtaatgattacaggatgattggtatttatagaggtcaaatccctctaactgatttgattccgttag 105  Q
    |||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2019368 gggaatctgaatattcttcattgatcaacgtttagtaatgattacaggatgattggtatttatagaggtcaaatccctctaactgatttgattcagttag 2019269  T
Q  106 ttagaaatctctcttagactagctagatgtgagagctgttattctacaggctatacacagctacaataggctatatttctatactgaaat-caacatagt 204  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  2019268 ttagaaatctctcttagactaggtagatgtgagagctgttattctacaggctatacacagctacaataggctatatttctatactgcaatacaacatagt 2019169  T
Q  205 agcatgcgtaaccatgaataagagtggaggctgcacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgag 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2019168 agcatgcgtaaccatgaataagagtggaggctgcacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgag 2019069  T
Q  305 atatctccagaagttcaagtaatccctcggaaccagaaacaggaatatgtcttcttaacgtgtccattctacagaagaaaagcaattatttcaaattgag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2019068 atatctccagaagttcaagtaatccctcggaaccagaaacaggaatatgtcttcttaacgtgtccattctacagaagaaaagcaattatttcaaattgag 2018969  T
Q  405 ataatgcaactgacagagatgttcagataatcagtgtaaagataatttttcattccctcgccagcagaaccnnnnnnnttgacacttggattcctgttta 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||||||||||||||    
T  2018968 ataatgcaactgacagagatgttcagataatcagtgtaaagataatttttcattcccccgccagcagaaccaaaaaaattgacacttggattcctgttta 2018869  T
Q  505 taggatagatcacagatccaaggatcatcattcatcaatgtgacaaaaatgtttgttccaattatttcaaaatgttacagaatgcaatagcaaatgatcg 604  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2018868 taggatagatcacagatccaaggatcatcat---tcaatgtgacaaaaatgtttgttccaattatttcaaaatgttacagaatgcaagagcaaatgatcg 2018772  T
Q  605 aaaaacatgaaaagtatgtactcttaggcc 634  Q
    ||||||||||||||||||||||||||||||    
T  2018771 aaaaacatgaaaagtatgtactcttaggcc 2018742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 215 - 425
Target Start/End: Complemental strand, 2035978 - 2035769
Alignment:
Q  215 accatgaataagagtggaggctgcacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctccag 314  Q
    ||||||||| | ||||||| |||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||  |||| | |    
T  2035978 accatgaatgaaagtggagactgcacaatactcgtaatgaatgtacctggcttgtcgcagcagtataaatcttatcttcaaacctttgagcaatcttccg 2035879  T
Q  315 aagttcaagtaatccctcggaaccagaaacaggaatatgtcttcttaacgtgtccattctacagaagaaaagcaattatttcaaattgagataatgcaac 414  Q
    ||||||||| |||||||| ||||||||||| |||| |||| ||||||| |||||||||||||| | ||||||||||||||||||||| ||||| |||||     
T  2035878 aagttcaagcaatccctcagaaccagaaacgggaagatgttttcttaatgtgtccattctacaaaggaaaagcaattatttcaaatt-agatagtgcaag 2035780  T
Q  415 tgacagagatg 425  Q
    |||||||||||    
T  2035779 tgacagagatg 2035769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 213 - 431
Target Start/End: Complemental strand, 1990230 - 1990012
Alignment:
Q  213 taaccatgaataagagtggaggctgcacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctcc 312  Q
    ||||||||||| | ||||||| |||||||||||| ||||||||||||||||||||| |||   |||||| |||||||||||||||| |||||  | || |    
T  1990230 taaccatgaatgaaagtggagactgcacaatactcgtaatgaatgtacctggcttgccgcatcagtatagatcttatcttcaaacctttgagcaagcttc 1990131  T
Q  313 agaagttcaagtaatccctcggaaccagaaacaggaatatgtcttcttaacgtgtccattctacagaagaaaagcaattatttcaaattgagataatgca 412  Q
     ||||||||||||||||||| |||||||||| ||||  || | |||||||||||||||||||||| | |||||||||||| |||||||| ||||| ||||    
T  1990130 cgaagttcaagtaatccctcagaaccagaaataggatgatattttcttaacgtgtccattctacaaaggaaaagcaattacttcaaatttagatagtgca 1990031  T
Q  413 actgacagagatgttcaga 431  Q
    | |||||||||||||||||    
T  1990030 agtgacagagatgttcaga 1990012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 227 - 431
Target Start/End: Complemental strand, 2021778 - 2021574
Alignment:
Q  227 agtggaggctgcacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctccagaagttcaagtaa 326  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||||| |||||  |||| | ||||||||| |||    
T  2021778 agtggaggcagcacaatactcgtaatgaatgtaccttgcttgtcgcagaagtgtaaatcttatcttcaaacctttgagcaatcttctgaagttcaattaa 2021679  T
Q  327 tccctcggaaccagaaacaggaatatgtcttcttaacgtgtccattctacagaagaaaagcaattatttcaaattgagataatgcaactgacagagatgt 426  Q
    ||||||  ||| ||||||||||| | || ||||||||||||||||||||||||  |||| ||||||||||||||| ||||||||||| ||||||| ||||    
T  2021678 tccctcataactagaaacaggaagacgttttcttaacgtgtccattctacagagaaaaatcaattatttcaaatttagataatgcaagtgacagaaatgt 2021579  T
Q  427 tcaga 431  Q
     ||||    
T  2021578 acaga 2021574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 524 - 621
Target Start/End: Complemental strand, 1989776 - 1989679
Alignment:
Q  524 aaggatcatcattcatcaatgtgacaaaaatgtttgttccaattatttcaaaatgttacagaatgcaatagcaaatgatcgaaaaacatgaaaagtat 621  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||| ||||||| || ||| ||||  ||||| | ||||||||    
T  1989776 aaggatcatcattcatcaatgatacaaaaaagtttgttccaattatttcaaaatgttacacaatgcaacagtaaaagatcataaaacttaaaaagtat 1989679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 516 - 621
Target Start/End: Complemental strand, 2021452 - 2021348
Alignment:
Q  516 acagatccaaggatcatcattcatcaatgtgacaaaaatgtttgttccaattatttcaaaatgttacagaatgcaatagcaaatgatcgaaaaacatgaa 615  Q
    |||||||||||||| | ||||||||||||| |||||||  ||||||||||| |||||||||||||||| ||||||| ||||| |||| | ||||| ||||    
T  2021452 acagatccaaggataaccattcatcaatgttacaaaaaaatttgttccaatgatttcaaaatgttacacaatgcaacagcaattgattg-aaaacttgaa 2021354  T
Q  616 aagtat 621  Q
    ||||||    
T  2021353 aagtat 2021348  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 542
Target Start/End: Complemental strand, 1989915 - 1989871
Alignment:
Q  498 ctgtttataggatagatcacagatccaaggatcatcattcatcaa 542  Q
    ||||||| |||| |||||||||| |||||||||||||||||||||    
T  1989915 ctgtttagaggacagatcacagaaccaaggatcatcattcatcaa 1989871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 2021940 - 2021893
Alignment:
Q  61 gtatttatagaggtcaaatccctctaactgatttgattccgttagtta 108  Q
    |||| |||| ||||||||||||||||||| ||||||||| ||||||||    
T  2021940 gtatctataaaggtcaaatccctctaacttatttgattcagttagtta 2021893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 258 - 371
Target Start/End: Complemental strand, 40911269 - 40911156
Alignment:
Q  258 tacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctccagaagttcaagtaatccctcggaaccagaaacaggaatatgtctt 357  Q
    |||||||||||| || | ||||||||||||||||||||||  ||| |  |||| | |||||||| | ||||| ||   |||||||||||||| ||| |||    
T  40911269 tacctggcttgttgcagcagtataaatcttatcttcaaacttttgggcaatcttccgaagttcatgcaatccttcttgaccagaaacaggaagatgcctt 40911170  T
Q  358 cttaacgtgtccat 371  Q
     |||| ||||||||    
T  40911169 tttaatgtgtccat 40911156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 258 - 371
Target Start/End: Original strand, 44968718 - 44968831
Alignment:
Q  258 tacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctccagaagttcaagtaatccctcggaaccagaaacaggaatatgtctt 357  Q
    |||||||||||| || | |||||||||||| |||||||||| ||| |  |||| | |||||||| | ||||| ||   |||||||||||||| ||| |||    
T  44968718 tacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccgaagttcatgcaatccttcttgaccagaaacaggaagatgcctt 44968817  T
Q  358 cttaacgtgtccat 371  Q
     |||| ||||||||    
T  44968818 tttaatgtgtccat 44968831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 371
Target Start/End: Original strand, 44983033 - 44983146
Alignment:
Q  258 tacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctccagaagttcaagtaatccctcggaaccagaaacaggaatatgtctt 357  Q
    |||||||||||| || | |||||||||||| |||||||||| ||| |  |||| |  ||||||| | ||||| ||   |||||||||||||| ||| |||    
T  44983033 tacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccaaagttcatgcaatccttcttgaccagaaacaggaagatgcctt 44983132  T
Q  358 cttaacgtgtccat 371  Q
     |||| ||||||||    
T  44983133 tttaatgtgtccat 44983146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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