View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_low_40 (Length: 227)
Name: NF19372_low_40
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 10753382 - 10753589
Alignment:
| Q |
5 |
gaaggtaaaatcctaaacctaacaaaattttcccaaataaaagttagaaaaattgaatctattgcnnnnnnnnnngttgtcttttttcgataattnnnnn |
104 |
Q |
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| T |
10753382 |
gaaggtaaaatcccaaacctaacaaaattttcccaaataaaagttagaaaaattgaatctattgcaaaaataaa-gttgtcttttttcgataattaaaaa |
10753480 |
T |
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| Q |
105 |
nngtaatctttaataaaagtaggaatggcattcaactaattagtaaagcgttgcacttgaaaattatggttggcaaatttattcacataatgatttcctt |
204 |
Q |
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| T |
10753481 |
aagtaatctttaataaaagtaggaatggcattcaactaattagcaaagcgttgcactcgaaaattatggttagcaaatttattcacataatgatttcctt |
10753580 |
T |
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| Q |
205 |
gttgtatat |
213 |
Q |
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| T |
10753581 |
ctcgtatat |
10753589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 10749434 - 10749483
Alignment:
| Q |
5 |
gaaggtaaaatcctaaacctaacaaaattttcccaaataaaagttagaaa |
54 |
Q |
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| T |
10749434 |
gaaggtaaaatccaaaacctaacaaaattttcccaaataaaagttagaaa |
10749483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 10749529 - 10749589
Alignment:
| Q |
107 |
gtaatctttaataaaagtaggaatggcattcaactaattagtaaagcgttgcacttgaaaa |
167 |
Q |
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| T |
10749529 |
gtaacctttaataaaagaaggaatgtcactccactaattggtaaagccttgcactcgaaaa |
10749589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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