View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19372_low_6 (Length: 589)

Name: NF19372_low_6
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19372_low_6
NF19372_low_6
[»] chr8 (7 HSPs)
chr8 (83-565)||(6013142-6013623)
chr8 (20-80)||(28694071-28694131)
chr8 (26-80)||(12206723-12206777)
chr8 (26-80)||(12451151-12451205)
chr8 (21-78)||(39513209-39513266)
chr8 (20-80)||(13782228-13782288)
chr8 (24-80)||(22550885-22550941)
[»] chr1 (9 HSPs)
chr1 (87-563)||(37422571-37423051)
chr1 (451-508)||(36272315-36272371)
chr1 (451-503)||(6767886-6767937)
chr1 (23-80)||(47653727-47653781)
chr1 (21-70)||(2425715-2425764)
chr1 (24-80)||(13636142-13636199)
chr1 (21-80)||(28456741-28456797)
chr1 (24-80)||(19161889-19161945)
chr1 (21-79)||(26607456-26607511)
[»] chr6 (8 HSPs)
chr6 (88-172)||(28976154-28976239)
chr6 (451-508)||(8383798-8383855)
chr6 (21-80)||(117255-117311)
chr6 (24-80)||(6204823-6204880)
chr6 (24-80)||(22305104-22305161)
chr6 (24-80)||(9048072-9048128)
chr6 (24-80)||(15888820-15888876)
chr6 (24-80)||(26349972-26350027)
[»] chr5 (6 HSPs)
chr5 (24-81)||(18512671-18512728)
chr5 (24-75)||(18512228-18512279)
chr5 (21-82)||(8539534-8539595)
chr5 (24-80)||(30192489-30192545)
chr5 (24-80)||(19037490-19037547)
chr5 (22-82)||(11348493-11348553)
[»] chr4 (12 HSPs)
chr4 (20-80)||(20208503-20208563)
chr4 (21-80)||(18884524-18884583)
chr4 (20-80)||(51037488-51037548)
chr4 (29-77)||(51429326-51429374)
chr4 (21-80)||(16984181-16984240)
chr4 (24-80)||(6178130-6178187)
chr4 (24-80)||(21018024-21018081)
chr4 (24-80)||(41795376-41795433)
chr4 (24-80)||(49094080-49094137)
chr4 (24-80)||(55793916-55793973)
chr4 (87-157)||(19130306-19130377)
chr4 (24-80)||(50447005-50447061)
[»] scaffold0101 (1 HSPs)
scaffold0101 (24-80)||(36554-36611)
[»] chr2 (11 HSPs)
chr2 (451-508)||(23462629-23462685)
chr2 (21-78)||(37322133-37322190)
chr2 (24-80)||(29406969-29407025)
chr2 (21-80)||(7189971-7190030)
chr2 (21-80)||(40156393-40156452)
chr2 (24-80)||(17424128-17424185)
chr2 (17-80)||(38779663-38779723)
chr2 (22-79)||(43976847-43976904)
chr2 (24-80)||(23346777-23346833)
chr2 (20-80)||(30803038-30803098)
chr2 (52-80)||(43491134-43491162)
[»] chr3 (13 HSPs)
chr3 (24-80)||(2062383-2062439)
chr3 (21-80)||(600564-600623)
chr3 (21-80)||(48246406-48246465)
chr3 (21-80)||(50998700-50998759)
chr3 (21-80)||(55385131-55385190)
chr3 (22-79)||(596779-596836)
chr3 (24-80)||(2647719-2647776)
chr3 (17-80)||(42148285-42148345)
chr3 (24-80)||(54389791-54389848)
chr3 (21-80)||(29918361-29918420)
chr3 (21-80)||(29967514-29967573)
chr3 (20-80)||(34543156-34543216)
chr3 (21-80)||(43476185-43476245)
[»] chr7 (2 HSPs)
chr7 (21-74)||(7974933-7974986)
chr7 (17-80)||(29097880-29097940)
[»] scaffold0065 (1 HSPs)
scaffold0065 (24-80)||(65315-65371)


Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 83 - 565
Target Start/End: Complemental strand, 6013623 - 6013142
Alignment:
Q  83 aaaagaagaacataatcttatcatgcactctctacactgaattttttatcctatcttccctaaccattctctctcatctctcacccaccaaaggaagcca 182  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6013623 aaaagaagaacatattcttatcatgcactctctacactgaattttttatcctatcttccctaaccattctctctcatctctcacccaccaaaggaagaca 6013524  T
Q  183 aattcactgtttatttttgtttcggtgacactacagttttaagttgcttcaaattgcaatgggtcttgaatcctatgagattctattcatatgggtatca 282  Q
    |||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |    
T  6013523 aattcaatgtttatttttgtttcgataacactacagttttaagtggcttcaaattgcaatgggtcttaaatcctatgaggttctattcatatgggtataa 6013424  T
Q  283 aaaattccttatgcttgtagctttaacatttcaactcaacaatattttaacaatctagcnnnnnnnattctcagactcattgatttttatttgtatgtgt 382  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||  ||||||||||||| ||||    
T  6013423 aaaattccttatacttgtagctttaacatttcaactcaacaatattttaacaatctagctttttttattctcagactcatcaatttttatttgtaggtgt 6013324  T
Q  383 ttttgggttcttacaagaaaggccatgaatcaatatactagatccgtgnnnnnnntaagggtactcgtgaaagggattgagagaccaatttcatgtcaaa 482  Q
    ||||||||||||| ||||| | |||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||||||||||    
T  6013323 ttttgggttcttaaaagaatgaccatgaatcaatatactagatctgtgaaaaaaataagggtactcgtgaaagggattgagagaccaatttcatgtcaaa 6013224  T
Q  483 ctgcaaaattcaaatttaaaatcagtattcaatttgatatagttttttcacgtcaaaatttggttaggtggttgttgacttga 565  Q
    |||||||||||||||| |||||||||||| |||||||||||| |||||||  |||||||||||||||||||||||||||||||    
T  6013223 ctgcaaaattcaaattgaaaatcagtatttaatttgatatag-tttttcatatcaaaatttggttaggtggttgttgacttga 6013142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 28694071 - 28694131
Alignment:
Q  20 tccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||    
T  28694071 tccctcggcagttaactgccgaagtttagtaaaaccggctgcagttaactgccgaggaaaa 28694131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 12206723 - 12206777
Alignment:
Q  26 ggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||| ||| |||||||||| |||| ||||| |||||||||||    
T  12206723 ggcagttaactgccgaagtttagtaaaaccgggtgcagttaaccgtcgaggaaaa 12206777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 12451151 - 12451205
Alignment:
Q  26 ggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||| ||| |||||||||| |||| ||||| |||||||||||    
T  12451151 ggcagttaactgccgaagtttagtaaaaccgggtgcagttaaccgtcgaggaaaa 12451205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 39513266 - 39513209
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaa 78  Q
    ||||||||||||||||  |||| |||   | |||||||||||||||||||||||||||    
T  39513266 ccctcggcagttaactatcgaaattttaaagaaccggctgcaattaactgtcgaggaa 39513209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 13782228 - 13782288
Alignment:
Q  20 tccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||||||||||||||||| || |||   | ||||| ||||||||||||| |||||||||    
T  13782228 tccctcggcagttaactgccaaaattttaaagaaccgactgcaattaactgccgaggaaaa 13782288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 22550941 - 22550885
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| |||   ||| ||||||||| ||||||| |||||||||    
T  22550941 tcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgaggaaaa 22550885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 87 - 563
Target Start/End: Complemental strand, 37423051 - 37422571
Alignment:
Q  87 gaagaacataatcttatcatgcactctctacactgaattttttatcctatcttccctaaccattctctctcatctctc--acccaccaaaggaagccaaa 184  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  37423051 gaagaacatgttcttatcatgcactctctacactgaattttttatcctatcttccctaaccattctctctcatctctctcacccaccaaaggaagccaaa 37422952  T
Q  185 ttcactgtttatttttgtttcggtgacactacagttttaagttgcttcaaattgcaatgggtcttgaatcctatgagattctattc-----atatgggta 279  Q
    | |||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||| ||||||||     |||||||||    
T  37422951 tccactgtttatgtttgtttcggtaacactacacttttaagtggcttcaaattgcaatgggttttgaatcctatgaggttctattcatatcatatgggta 37422852  T
Q  280 tcaaaaattccttatgcttgtagctttaacatttcaactcaacaatattttaacaatctagcnnnnnnnattctcagactcattgatttttatttgtatg 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||    
T  37422851 tcaaaaattccttatgcttgtagctttaacatttcaactcaacaatattttaacaatctagctttttttattctcagactcatcgatttttatttgtatg 37422752  T
Q  380 tgtttttgggttcttacaagaaaggccatgaatcaatatactagatccgtgnnnnnnntaagggtactcgtgaaagggattgagagaccaatttcatgtc 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||       |||||||||| |||||||||||||| |||  |||||||||||    
T  37422751 tgtttttgggttcttacaagaaaggccatgaatcaatatactagatttgtg-aaacaataagggtacttgtgaaagggattgacagaaaaatttcatgtc 37422653  T
Q  480 aaactgcaaaattcaaatttaaaatcagtattcaatttgatatagttttttcacgtcaaaatttggttaggtggttgttgactt 563  Q
    |||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37422652 aaactgcaaaa--caaattgaaaatcagtattcaatttgatatagttttttcacgtcaaactttggttaggtggttgttgactt 37422571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 451 - 508
Target Start/End: Original strand, 36272315 - 36272371
Alignment:
Q  451 gaaagggattgagagaccaatttcatgtcaaactgcaaaattcaaatttaaaatcagt 508  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||    
T  36272315 gaaagggattg-gagaccaatttcatgtcaaacagcaaaattcaaattgaaaaccagt 36272371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 503
Target Start/End: Original strand, 6767886 - 6767937
Alignment:
Q  451 gaaagggattgagagaccaatttcatgtcaaactgcaaaattcaaatttaaaa 503  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  6767886 gaaagggattg-gagaccaatttcatgtcaaacagcaaaattcaaattgaaaa 6767937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 47653781 - 47653727
Alignment:
Q  23 ctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||||||||||||||||||| |   ||||||||||||| ||||||| |||||||||    
T  47653781 ctcggcagttaactgccgaattat---aaaaccggctgcagttaactgccgaggaaaa 47653727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 2425764 - 2425715
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactg 70  Q
    |||||||||||||||||||||| ||| | ||| ||||||||| |||||||    
T  2425764 ccctcggcagttaactgccgaagttttggaaatccggctgcagttaactg 2425715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 13636199 - 13636142
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaa-ccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| ||| | |||| ||||||||| ||||||| |||||||||    
T  13636199 tcggcagttaactgccgaaattttgaaaaatccggctgcagttaactgccgaggaaaa 13636142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 28456797 - 28456741
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||||||||    || ||||||||||| |||||| ||||||||||    
T  28456797 ccctcggcagttaactgccgaatt---atagaaccggctgcagttaactatcgaggaaaa 28456741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 19161889 - 19161945
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| |||   ||| ||||||||| ||||||| |||||||||    
T  19161889 tcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgaggaaaa 19161945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 26607511 - 26607456
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaa 79  Q
    |||||||||||||||||||||||| | |   ||||||||||| ||||||| ||||||||    
T  26607511 ccctcggcagttaactgccgaattatgg---aaccggctgcagttaactgccgaggaaa 26607456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 28976239 - 28976154
Alignment:
Q  88 aagaacataatcttatcatgcactctctacactgaatttttta-tcctatcttccctaaccattctctctcatctctcacccacca 172  Q
    ||||||||  |||||||||||| ||||||| |||||||||||  | |||||||||||||| |||||||||||||||||||| ||||    
T  28976239 aagaacatgctcttatcatgcattctctacgctgaatttttttgtactatcttccctaactattctctctcatctctcacctacca 28976154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 451 - 508
Target Start/End: Original strand, 8383798 - 8383855
Alignment:
Q  451 gaaagggattgagagaccaatttcatgtcaaactgcaaaattcaaatttaaaatcagt 508  Q
    |||||||||||| ||| |||||| ||||||||| ||||||||| |||| |||||||||    
T  8383798 gaaagggattgaaagatcaattttatgtcaaacagcaaaattcgaattgaaaatcagt 8383855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 117255 - 117311
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||||||||||||||||||||| | |   ||||||||||| ||||||| |||||||||    
T  117255 ccctcggcagttaactgccgaattatgg---aaccggctgcagttaactgccgaggaaaa 117311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 6204823 - 6204880
Alignment:
Q  24 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||| |||||||  ||| ||||||||| ||||||| |||||||||    
T  6204823 tcggcagttaactgccgaaattttctcaaatccggctgcagttaactgccgaggaaaa 6204880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 22305104 - 22305161
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaa-ccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| ||| | |||| ||||||||| ||||||| |||||||||    
T  22305104 tcggcagttaactgccgaaattttgaaaaatccggctgcagttaactgccgaggaaaa 22305161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 9048072 - 9048128
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| |||   ||||||||||||| ||||||  |||||||||    
T  9048072 tcggcagttaactgccgaagtttgaaaaaaccggctgcagttaactaccgaggaaaa 9048128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 15888876 - 15888820
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||| ||||| |||   ||||||||||||| ||||||| |||||||||    
T  15888876 tcggcagttaactaccgaagttttagaaaaccggctgcagttaactgccgaggaaaa 15888820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 26349972 - 26350027
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| ||| || |||||||| ||| ||||||| |||||||||    
T  26349972 tcggcagttaactgccgaagtttagt-aaaccggcggcagttaactgccgaggaaaa 26350027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 18512728 - 18512671
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaat 81  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||    
T  18512728 tcggcagttaactgccgaagtttagtaaaaccggctgcagttaactgccgaggaaaat 18512671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 18512228 - 18512279
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgag 75  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||    
T  18512228 tcggcagttaactgccgaagtttagtaaaaccggctgcagttaactgccgag 18512279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 8539595 - 8539534
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaatg 82  Q
    |||||||||||||||||||||| |||   ||| ||||||||| ||||||| |||||||||||    
T  8539595 ccctcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgaggaaaatg 8539534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 30192489 - 30192545
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| |||   | ||||||||||| |||||||||||||||||    
T  30192489 tcggcagttaactgccgaaattttaaagaaccggctgcagttaactgtcgaggaaaa 30192545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 19037547 - 19037490
Alignment:
Q  24 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||| |||||||  ||| ||||||||| ||||||| |||||||||    
T  19037547 tcggcagttaactgccgaaattttctcaaatccggctgcagttaactgccgaggaaaa 19037490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 11348553 - 11348493
Alignment:
Q  22 cctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaatg 82  Q
    ||||||||||||||||||||| |||   ||| |||| |||| ||||||| |||||||||||    
T  11348553 cctcggcagttaactgccgaagttttagaaatccggatgcagttaactgccgaggaaaatg 11348493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 20208503 - 20208563
Alignment:
Q  20 tccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||||||| |||  || ||||||||||| ||||||| |||||||||    
T  20208503 tccctcggcagttaactgccgaagtttactagaaccggctgcagttaactgccgaggaaaa 20208563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 18884583 - 18884524
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||||||||||||||||||| ||| | ||||||||||||| ||||||| |||| ||||    
T  18884583 ccctcggcagttaactgccgaaattttgaaaaaccggctgcagttaactgccgagaaaaa 18884524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 51037548 - 51037488
Alignment:
Q  20 tccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||||||| |||   |||  |||||||||||||||| |||||||||    
T  51037548 tccctcggcagttaactgccgaagttttagaaatacggctgcaattaactgccgaggaaaa 51037488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 51429374 - 51429326
Alignment:
Q  29 agttaactgccgaattttcgtaaaaccggctgcaattaactgtcgagga 77  Q
    |||||||||||||||||| |  |||||||||||| ||||||||||||||    
T  51429374 agttaactgccgaattttggagaaaccggctgcagttaactgtcgagga 51429326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 16984240 - 16984181
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||||||||||||||||||| |||   ||| ||||||||| ||||||| |||||||||    
T  16984240 ccctcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgaggaaaa 16984181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 6178187 - 6178130
Alignment:
Q  24 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||| |||||||  ||| ||||||||| ||||||| |||||||||    
T  6178187 tcggcagttaactgccgaaattttctcaaatccggctgcagttaactgccgaggaaaa 6178130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 21018081 - 21018024
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaa-ccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||| ||| ||| | |||| ||||||||||||||||| |||||||||    
T  21018081 tcggcagttaactgctgaaattttgaaaaatccggctgcaattaactgccgaggaaaa 21018024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 41795433 - 41795376
Alignment:
Q  24 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||| |||||||  ||| ||||||||| ||||||| |||||||||    
T  41795433 tcggcagttaactgccgaaattttctcaaatccggctgcagttaactgccgaggaaaa 41795376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 49094080 - 49094137
Alignment:
Q  24 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||| |||||||  ||| ||||||||| ||||||| |||||||||    
T  49094080 tcggcagttaactgccgaaattttctcaaatccggctgcagttaactgccgaggaaaa 49094137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 55793916 - 55793973
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaa-ccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| ||| | |||| ||||||||| ||||||| |||||||||    
T  55793916 tcggcagttaactgccgaaattttgaaaaatccggctgcagttaactgccgaggaaaa 55793973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 19130377 - 19130306
Alignment:
Q  87 gaagaacataatcttatcatgcactctcta-cactgaattttttatc-ctatcttccctaaccattctctctc 157  Q
    |||||||| ||||||||||||| | ||||| ||||||||||||| || || ||||||| ||||||||||||||    
T  19130377 gaagaacacaatcttatcatgctc-ctctaacactgaattttttctcactttcttccccaaccattctctctc 19130306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 50447005 - 50447061
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| |||   |||  |||||||| |||||||||||||||||    
T  50447005 tcggcagttaactgccgaagttttaaaaatacggctgcagttaactgtcgaggaaaa 50447061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 36611 - 36554
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaa-ccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| ||| | |||| ||||||||||||||||| |||||||||    
T  36611 tcggcagttaactgccgaaattttgaaaaatccggctgcaattaactgccgaggaaaa 36554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 451 - 508
Target Start/End: Complemental strand, 23462685 - 23462629
Alignment:
Q  451 gaaagggattgagagaccaatttcatgtcaaactgcaaaattcaaatttaaaatcagt 508  Q
    ||||||||||| ||||||||||||||||||||  |||||||||||||| |||| ||||    
T  23462685 gaaagggattg-gagaccaatttcatgtcaaatagcaaaattcaaattgaaaaccagt 23462629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 37322190 - 37322133
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaa 78  Q
    |||||||||||||||||||||| ||| | | ||||||||||| ||||||| |||||||    
T  37322190 ccctcggcagttaactgccgaaattttgaagaaccggctgcagttaactgccgaggaa 37322133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 29406969 - 29407025
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| |||   | ||||||||||||||||||| |||||||||    
T  29406969 tcggcagttaactgccgaaattttaaagaaccggctgcaattaactgccgaggaaaa 29407025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 7190030 - 7189971
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||||||||||||||||||| |||   ||| ||||||||| ||||||| |||||||||    
T  7190030 ccctcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgaggaaaa 7189971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 40156393 - 40156452
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||| ||||||| ||||||| ||| | ||||||||||||| ||||||| |||||||||    
T  40156393 ccctcgacagttaattgccgaaattttgaaaaaccggctgcagttaactgacgaggaaaa 40156452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 17424128 - 17424185
Alignment:
Q  24 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||| |||||| | ||| ||||||||| ||||||| |||||||||    
T  17424128 tcggcagttaactgccgaaattttggaaaatccggctgcagttaactgccgaggaaaa 17424185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 38779723 - 38779663
Alignment:
Q  17 atatccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||||||||||||||||||||||||| | |   ||||||||||| ||||||  |||||||||    
T  38779723 atatccctcggcagttaactgccgaattatgg---aaccggctgcagttaactcccgaggaaaa 38779663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 43976847 - 43976904
Alignment:
Q  22 cctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaa 79  Q
    ||||||||||||||||||||| |||   ||||||||||| | ||||||| ||||||||    
T  43976847 cctcggcagttaactgccgaaattttaaaaaaccggctgtagttaactgccgaggaaa 43976904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 23346777 - 23346833
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| |||  |||| ||||||||| ||||||| | |||||||    
T  23346777 tcggcagttaactgccgaagttttataaatccggctgcagttaactgccaaggaaaa 23346833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 30803098 - 30803038
Alignment:
Q  20 tccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||||||| |||   |||  |||||||| ||||||| |||||||||    
T  30803098 tccctcggcagttaactgccgaagttttagaaatacggctgcagttaactgccgaggaaaa 30803038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 43491134 - 43491162
Alignment:
Q  52 aaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||||||||||||||||||||||||||    
T  43491134 aaccggctgcaattaactgtcgaggaaaa 43491162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 2062383 - 2062439
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| |||   ||||| ||||||| |||||||||||||||||    
T  2062383 tcggcagttaactgccgaagttttagaaaactggctgcagttaactgtcgaggaaaa 2062439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 600623 - 600564
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||| ||||||||||||||| ||| | ||| ||||| ||| |||||||||||||||||    
T  600623 ccctcgacagttaactgccgaagttttggaaatccggccgcagttaactgtcgaggaaaa 600564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 48246406 - 48246465
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||||||||||||||| ||| |||   ||| ||||||||| |||||||||||||||||    
T  48246406 ccctcggcagttaactgctgaagttttagaaatccggctgcagttaactgtcgaggaaaa 48246465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 50998759 - 50998700
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||||||||||||||||||| |||  |||| ||||||||| ||||||| ||| |||||    
T  50998759 ccctcggcagttaactgccgaagttttataaatccggctgcagttaactgccgaagaaaa 50998700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 55385131 - 55385190
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||||||||||||||||||| |||   ||| ||||||||| ||||||| |||||||||    
T  55385131 ccctcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgaggaaaa 55385190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 596779 - 596836
Alignment:
Q  22 cctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaa 79  Q
    |||||||| |||||||||||| ||| |||||  |||||||| ||||||| ||||||||    
T  596779 cctcggcaattaactgccgaagttttgtaaattcggctgcagttaactgccgaggaaa 596836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 2647776 - 2647719
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaa-ccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| ||| | |||| ||||||||| ||||||| |||||||||    
T  2647776 tcggcagttaactgccgaaattttgaaaaatccggctgcagttaactgccgaggaaaa 2647719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 42148285 - 42148345
Alignment:
Q  17 atatccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||| ||||||||||||||||||||||| | |   ||||||||||| |||||| ||||||||||    
T  42148285 atattcctcggcagttaactgccgaattatgg---aaccggctgcagttaactatcgaggaaaa 42148345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 54389791 - 54389848
Alignment:
Q  24 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||| |||||||  ||| ||||||||| ||||||| |||||||||    
T  54389791 tcggcagttaactgccgaaattttctcaaatccggctgcagttaactgccgaggaaaa 54389848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 29918420 - 29918361
Alignment:
Q  21 ccctcggcagttaactgccgaatt-ttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||| |||||||||||||  |||| ||||||||||||| ||||||| |||||||||    
T  29918420 ccctcggcaattaactgccgaataattcg-aaaaccggctgcagttaactgccgaggaaaa 29918361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 29967573 - 29967514
Alignment:
Q  21 ccctcggcagttaactgccgaatt-ttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||| |||||||||||||  |||| ||||||||||||| ||||||| |||||||||    
T  29967573 ccctcggcaattaactgccgaataattcg-aaaaccggctgcagttaactgccgaggaaaa 29967514  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 34543216 - 34543156
Alignment:
Q  20 tccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||||||| |||   |||  |||||||| ||||||| |||||||||    
T  34543216 tccctcggcagttaactgccgaagttttagaaatacggctgcagttaactgccgaggaaaa 34543156  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 43476185 - 43476245
Alignment:
Q  21 ccctcggcagttaactgccgaa-ttttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||| |||||||||||||| |||| | ||| ||||||||| ||||||| |||||||||    
T  43476185 ccctcggaagttaactgccgaagttttagaaaatccggctgcagttaactgccgaggaaaa 43476245  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 7974933 - 7974986
Alignment:
Q  21 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcga 74  Q
    |||||||||||||||||||||||| |    |||||||||||| |||||||||||    
T  7974933 ccctcggcagttaactgccgaattctgaagaaaccggctgcagttaactgtcga 7974986  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 29097940 - 29097880
Alignment:
Q  17 atatccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    |||||||||||||||||||||||||||| | |   ||||||||||| ||||||  |||||||||    
T  29097940 atatccctcggcagttaactgccgaattatgg---aaccggctgcagttaactaccgaggaaaa 29097880  T

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Target: scaffold0065 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 65315 - 65371
Alignment:
Q  24 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 80  Q
    ||||||||||||||||||| |||   | || |||||||| |||||||||||||||||    
T  65315 tcggcagttaactgccgaaatttaaaagaatcggctgcagttaactgtcgaggaaaa 65371  T

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