View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_low_7 (Length: 556)
Name: NF19372_low_7
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 9280943 - 9281219
Alignment:
| Q |
1 |
aaataaaagtgtagtagattcagaattaacattataatattttatctttcaatttacttttatgcgtaaagagatataatatggtgaataaacagacgca |
100 |
Q |
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| T |
9280943 |
aaataaaagtgtagtagattcagaattaacattataatattttatctttgaatttacttttatgcataaagagatataatatggtgaataaacagccgca |
9281042 |
T |
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| Q |
101 |
cgaagnnnnnnnnnnttgaggaaaatttgtctgcacacttgtttaaaagactaaagagtagcaccaaaacgacatgacttgattattagttttaaaacaa |
200 |
Q |
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| T |
9281043 |
cgatgaaaaaaaaaatt-aggaaaatttgtctgcacacttgtttaaaagactaaagagtagcaccaaaacgacatgacttgattattagttttaaaacaa |
9281141 |
T |
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| Q |
201 |
ttgttt--gtggaaaattagttgaaattttcaatttagagacaacaacttggtggtacattattcatagataaattct |
276 |
Q |
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| T |
9281142 |
ttgttttagtggaaaattggttgaaattttcaatttagagacaacaacttggtggtacattattcatagataaattct |
9281219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 294 - 519
Target Start/End: Original strand, 49463979 - 49464201
Alignment:
| Q |
294 |
tcaacttctacttagaggtgttgtcgaaattttgagctatttttaagcatggatttactgtagaactctttgaaatacc--agacatacactaaattaat |
391 |
Q |
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| T |
49463979 |
tcaatttctacttggaggtgttgtggaaattttgagctattttcaagcatggatgtaaagtagaacactttgaaataccaaacacagacacaaaattaat |
49464078 |
T |
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| Q |
392 |
tgaatataatcacatgtgttagtgttggtgtcgagtcgtacaccaaacacatctatcatcataagtctcaatgcta--gctataaaacaataaaacacat |
489 |
Q |
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| T |
49464079 |
tgaatgtaatcatat------atgttggtgttgtatggtacaccaaacacacatttcatcataagtct-agtgatattgagataaaacaataaaacacaa |
49464171 |
T |
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| Q |
490 |
gagacaactcttcacgctaacaattacctg |
519 |
Q |
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| T |
49464172 |
gggacaaatcttcacgcaaacaattacctg |
49464201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 30075674 - 30075638
Alignment:
| Q |
388 |
taattgaatataatcacatgtgttagtgttggtgtcg |
424 |
Q |
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| T |
30075674 |
taattgaatgtaatcacatgtgttggtgttggtgtcg |
30075638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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