View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19373_low_1 (Length: 492)
Name: NF19373_low_1
Description: NF19373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19373_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Complemental strand, 49823536 - 49823088
Alignment:
| Q |
11 |
cagagagacggaacaatctctggccgtagatcaaagctcttctctggcaaatccgacggctcagcatattttcaacgatcaaggaagacaaaaatggatc |
110 |
Q |
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| T |
49823536 |
cagagagacggaacaatctctggccgtagatcaaagctcttctctggcaaatccaacggctcagcatatttgcaacgatcaaggaagacaaaaatggatc |
49823437 |
T |
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| Q |
111 |
tttcgttttgttttattttattttatgttctgtgtctgtttaattgtgaagatgaaaacaggggagtttgaaaagaagaagagacgtttggaagtgaaac |
210 |
Q |
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| T |
49823436 |
tttcgttttgttttattttattttatgttctgtgtctgtttaattgtgaagatgaaaacaggggagtttgaaaagaagaagagacgtttggaagtgaaac |
49823337 |
T |
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| Q |
211 |
aagaaatgaagaaatgtgtatgttgtgtttttgagatttatcagtgcattgcatgctgacaagatgctgactggtaataatgtcgtgtttgttcaaactt |
310 |
Q |
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| T |
49823336 |
aagaaatgaagaaatg----tgttgtgtttttgagatttatcagtgcattgaatgctgacaagatgctgactggtaataatgtcgtgtttgttcaaactt |
49823241 |
T |
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| Q |
311 |
gaaatgggtcatcattgaattgccatggatagataaggactgattaaaatatacaagcacgtcacttatcctgttctgttatgatgaaaacatgagttgc |
410 |
Q |
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| T |
49823240 |
gaaatgggtcatcattgaattggcatggatagataaggactgattaaaatatacaagcacgtcacttatc-----ctgttatgatgaaaacatgagttgc |
49823146 |
T |
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| Q |
411 |
acagattggattaaacaattccaatctaaaaagataagataagataaacaacttatacatgca |
473 |
Q |
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| T |
49823145 |
acagattggattaaacaattccaatctaaa-----aagataagataaacaacttatacatgca |
49823088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 428
Target Start/End: Complemental strand, 22298204 - 22298113
Alignment:
| Q |
335 |
atggatagataaggactgattaaaatatacaagcacgtcacttatcctgttctgttatgatgaaaacatgagttgcacagattggattaaacaa |
428 |
Q |
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|||||||||||||||| ||||||| |||| ||||||||||||||| | | ||||| ||| || |||||| | ||||||||||||||||||| |
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| T |
22298204 |
atggatagataaggaccgattaaactatagaagcacgtcacttat--tatcctgttcccatggaaccatgagatacacagattggattaaacaa |
22298113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 22292607 - 22292563
Alignment:
| Q |
335 |
atggatagataaggactgattaaaatatacaagcacgtcacttat |
379 |
Q |
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| T |
22292607 |
atggatagataaggaccgattaaattatagaagcacgtcacttat |
22292563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 428
Target Start/End: Original strand, 13643073 - 13643164
Alignment:
| Q |
335 |
atggatagataaggactgattaaaatatacaagcacgtcacttatcctgttctgttatgatgaaaacatgagttgcacagattggattaaacaa |
428 |
Q |
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|||||||||||||||| ||||||| |||| ||||||||||||||| | | ||||| ||| || |||||| | ||||||||||||||||||| |
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| T |
13643073 |
atggatagataaggaccgattaaactatagaagcacgtcacttat--tatcctgttcccatggaaccatgagatacacagattggattaaacaa |
13643164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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