View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19373_low_2 (Length: 273)
Name: NF19373_low_2
Description: NF19373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19373_low_2 |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 13106174 - 13106323
Alignment:
| Q |
20 |
agtacctcgtgcctcaattttcatttgatcttttaatctcgttttaatttattttgaataacattgtttaatctttgaaaactaatgcattaaccatctt |
119 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
13106174 |
agtacctcatgcctcaattttcatttgatctttttatctcgttttaatttattttgaataatattgtttaatctttgaaaactaatgcattgaccatctt |
13106273 |
T |
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| Q |
120 |
ctaatcctgctcttttttcttacttcaattttacagatgtttgtttcaat |
169 |
Q |
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| T |
13106274 |
ctaatgctgctcttttttcttacttcaattttacatatgtttgtttcaat |
13106323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 46142265 - 46142411
Alignment:
| Q |
20 |
agtacctcgtgcctcaattttcatttgatcttttaatctcgttttaatttattttgaataacattgtttaatctttgaaaactaatgcattaaccatctt |
119 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46142265 |
agtacctcatgcctcaattttcatttgatcttttaatctcgttttaatttattttgaataacattgtttaatctttgaaaactaatgcattaatcatctt |
46142364 |
T |
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| Q |
120 |
ctaatcctgctcttttttcttacttcaattttacagatgtttgtttcaata |
170 |
Q |
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| T |
46142365 |
ctaatcctgctctttttt----cttcaattttacagatgtttgtttcaata |
46142411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 51194449 - 51194594
Alignment:
| Q |
20 |
agtacctcgtgcctcaattttcatttgatcttttaatctcgttttaatttattttgaataacattgtttaatctttgaaaactaatgcattaaccatctt |
119 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||| || ||| ||| |||||||||||||||| |||||||||| |||||||| |
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| T |
51194449 |
agtacctcatgcctcaattttcatttgatcttttt-tctcgttttaatttgttctgactaat-ttgtttaatctttgaa--ctaatgcattgaccatctt |
51194544 |
T |
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| Q |
120 |
ctaatcctgctcttttttcttacttcaattttacagatgtttgtttcaat |
169 |
Q |
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|||| |||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
51194545 |
ctaaagctgctcttttttcttacttcaattttacggatgcttgtttcaat |
51194594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 12164 - 12023
Alignment:
| Q |
20 |
agtacctcgtgcctcaattttcattt-gatcttttaatctcgttttaatttattttgaataacattgtttaatctttgaaaactaatgcattaaccatct |
118 |
Q |
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|||||||| | ||||||||||||||| |||||||| |||||||||||||| |||||| |||||||||||||||||||||||||| || |||| |
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| T |
12164 |
agtacctcattcctcaattttcattttgatcttttt-tctcgttttaatttgttttga--------gtttaatctttgaaaactaatgcattgactatct |
12074 |
T |
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| Q |
119 |
tctaatcctgctcttttttcttacttcaattttacagatgtttgtttcaat |
169 |
Q |
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||||| ||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
12073 |
tctaaagttgctcttttttcttacttcaattttacggatgcttgtttcaat |
12023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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