View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19374_high_1 (Length: 496)
Name: NF19374_high_1
Description: NF19374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19374_high_1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 38308640 - 38309136
Alignment:
| Q |
1 |
catgcaatcctaatttgtatagttgcatgggctgtttgtgaatacgttgctcagcacacaaacttaattatttttctnnnnnnntaatctgctgcaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38308640 |
catgcaatcctaatttgtatagttgcatgggctgtttgtgaatacgttgctcagcacacaaacttaattatttttctaaaaaaataatctgctgcaaaaa |
38308739 |
T |
|
| Q |
101 |
ataactgagtttagctaacatttgaatttaaattaatattttcattaacattgttcgtgtttagatagatttatagtttaaagacc-actaccttattta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38308740 |
ataactgagtttagctaacatttgaatttaaattaatattttcattaacattattcgtgtttagatagatttatagtttaaagacccactaccttattta |
38308839 |
T |
|
| Q |
200 |
tcaaaattaaaaactaaatgagcactacaagctacaatattttaaactcccagctcacattcaactgctctgcctaaagagaaaaaactcacatttactg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38308840 |
tcaaaattaaaaactaaatgagcactacaagctacaatattttaaactcccagctcacattcaactgctctgcctaaagagaaaaaactcacatttactg |
38308939 |
T |
|
| Q |
300 |
ccattgcttcacttctaatcaccttactgtcaatcaattccaacaaaaaataatcaaatttagtttaaaacattacctagagaaaagattaaaagtggga |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38308940 |
ccattgcttcacttctaatcaccttactgtcaatcaattccaacaaaaaataatcaaatttagtttaaaacattacctagagaaaagattaaaagtggga |
38309039 |
T |
|
| Q |
400 |
ttgagtttgacaaacgccaaagcaaaacatactaacaatgggtctgtgcatctctaacataataacagtaaacaattccataggccgttcttaatat |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38309040 |
ttgagtttgacaaacgccaaagcaaaacatactaacaatgggtctgtgcatctctaacataataacagtaaacaattccataggacgttcttaatat |
38309136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University