View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19374_high_11 (Length: 253)
Name: NF19374_high_11
Description: NF19374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19374_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 53089048 - 53088825
Alignment:
| Q |
18 |
cttgattcagggtggagctcaggtgaccgtggaagttgatggcgtatggtggggaggaccgcgatgatatgttcattgttcaatagagtaaagttaaacc |
117 |
Q |
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| T |
53089048 |
cttgattcagggtggagctcaggtgaccgtggaagttgatggcgtatggtggggaggaccacgatgatatgttcattgttcaatagagtaaagttaaacc |
53088949 |
T |
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| Q |
118 |
atcaagaacttgattaaaatagaatgtaaataaagcaggagagaataagacacatgcatcatatatcatattttatactggttcaccatcaaccacattg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53088948 |
atcaagaacttgattaaaatagaatgtaaataaagcaggagagaataagacacatgcatcatatatcatattttatactggttcaccatcaaccacattg |
53088849 |
T |
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| Q |
218 |
aacagtttctcttctatactccta |
241 |
Q |
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||||||||||||| |||||||||| |
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| T |
53088848 |
aacagtttctcttttatactccta |
53088825 |
T |
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