View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19374_high_12 (Length: 230)
Name: NF19374_high_12
Description: NF19374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19374_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 2121672 - 2121469
Alignment:
| Q |
16 |
tcatggtcaccatccaattcaatcatctcgccatttataaatgattttattgtgagatctttgttgtctatcaaaatgggaccaagtgccttcaaccatt |
115 |
Q |
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| T |
2121672 |
tcatggtcaccatccaattcaatcatctctccatctataaatgattttattgtgagatctttgttgtccatcaaaatgggaccaagtgccttcaaccatt |
2121573 |
T |
|
| Q |
116 |
gtacttcaagtatgatatgagcttcactacgcgtaagaacgtgcaagtccattgcaaacatatgagattgtacattgaccaatacgtttgtacaaatttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2121572 |
gtacttcaagtatgatatgagcttcactacgcgtaagaacgtgcaagtccattgcaaacatatgagattgtacattgaccaatatgtttgtacaaatttg |
2121473 |
T |
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| Q |
216 |
atga |
219 |
Q |
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|||| |
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| T |
2121472 |
atga |
2121469 |
T |
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