View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19374_high_2 (Length: 439)
Name: NF19374_high_2
Description: NF19374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19374_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 218 - 421
Target Start/End: Original strand, 25249416 - 25249619
Alignment:
| Q |
218 |
gataaatagcattgcgctttgtattttgacatacaataaatttcagcatacttataaaagggaaataatgtaacaaaacaacagagtttcattgtacgtc |
317 |
Q |
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| T |
25249416 |
gatacatagcattgccctttgtattttgacatacaataaatttcagcatacttataaaagggaaatgatgtaacaaaacaacagagtttcattgtatgtc |
25249515 |
T |
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| Q |
318 |
agtatcaaacttgtttacaccaataatgcataatgaacattgaaatcacaatttatctggtagataaaattagatttcattgaaagcctttgcttgcatc |
417 |
Q |
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| T |
25249516 |
agtatcaaacttgtttacaccaataatgcataatgaacattgaaatcacaatttatctggtagataaaattagatttcattgaaatcctttgcttgcatc |
25249615 |
T |
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| Q |
418 |
aatt |
421 |
Q |
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|||| |
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| T |
25249616 |
aatt |
25249619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 25249213 - 25249391
Alignment:
| Q |
11 |
tatactcaataactattgtgtttttcggccgacgagaaacaaaatttcact-tttctctagttaaccgtaaatactgagacattcgtgaaaaatactctc |
109 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
25249213 |
tatactcaatacctattgtgtttttcggccgaccagaaacaaaatttcactatttcactagttaacggtaaatcatgagacattcgtgaaaaatactctc |
25249312 |
T |
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| Q |
110 |
acgataaacaacattgccctttcggccgatcaaaataagatttcaatatttaaccataaatcatgagatattcgtgaaaa |
189 |
Q |
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| T |
25249313 |
atgataaaca-cattgccctttcggccgatcaaaacaagatttcaatatttaaccataaatcatgagattttcgtgaaaa |
25249391 |
T |
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