View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19374_high_7 (Length: 295)
Name: NF19374_high_7
Description: NF19374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19374_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 36031837 - 36031564
Alignment:
| Q |
13 |
aatatttgggcctgggtcctcttagaactcgcactaggttttccaattccatgtaccccaattttctattatctctcccaaagaaattactttgtagccg |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36031837 |
aatatttgggcctgggtcctcttacaactcgcactaggttttccaattccatttaccccatttttttattatctctcccaaagaaattactttgtagccg |
36031738 |
T |
|
| Q |
113 |
gc-tctcactaaatttcaaatatagtcggctgtcatgggtttgtgcttcaaggaaaagaagtaaaagcacaacaaaaattatcgagataatatgttgctt |
211 |
Q |
| |
|
|| |||| |||||||| |||||||||| |||||||||||||||||||| |||| |||| | ||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
36031737 |
gcttctccctaaatttaaaatatagtccgctgtcatgggtttgtgctttaagggaaaggaataaaagccccacccaaattatcgagataatatgttgctt |
36031638 |
T |
|
| Q |
212 |
tagaatttctctttc-----nnnnnnnnnnntgttgatttagaattttgatccattgagatatttaaccaaaaa |
280 |
Q |
| |
|
|| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36031637 |
taaaatttttttttcaaaaaaaaaaaaaaaatgttgatttagaattttgatccattgagatatttaaccaaaaa |
36031564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University