View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19374_low_14 (Length: 202)
Name: NF19374_low_14
Description: NF19374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19374_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 43565000 - 43565147
Alignment:
| Q |
33 |
agagaatgaactgaaagaaacattctcaggaacatcatggaacaaaggaacacctctcaccttaaactttccctcagataaatcaaataatgactcggtt |
132 |
Q |
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| T |
43565000 |
agagaaagaaccgaaagaaacattctcaggaacatcatggaacaaagaaacatctctaaccttaaactttccctcagataaatcaaataaagactcagtt |
43565099 |
T |
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| Q |
133 |
ttgatgagatcaagggttgtggaatttggtggagccat-gaaagaaag |
179 |
Q |
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| T |
43565100 |
ttgatgagatcaaggtttgtggaattcggtggagccatggaaagaaag |
43565147 |
T |
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Target: chr8 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 36432939 - 36433075
Alignment:
| Q |
17 |
agggtttgcaaatagaagagaatgaactgaaagaaacattctcaggaacatcatggaacaaaggaacacctctcaccttaaactttccctcagataaatc |
116 |
Q |
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| T |
36432939 |
agggtttacatatagaagagaatgaactgaaagaaacattctcaggaacatcatgaaacaaaggaacacccctaacagtgaattttccctcggataaatc |
36433038 |
T |
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| Q |
117 |
aaataatgactcggttttgatgagatcaagggttgtg |
153 |
Q |
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| T |
36433039 |
aagcaatgactcagttttgacaatatcaagggttgtg |
36433075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 43973614 - 43973477
Alignment:
| Q |
21 |
tttgcaaatagaagagaatgaactgaaagaaacattctcaggaacatcatggaacaaaggaacacctctcaccttaaactttccctcagataaatcaaat |
120 |
Q |
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| T |
43973614 |
tttgcatatagcagagaaagaactaaaagaaacattgttaggaacatcatggaacaaaggaacgcctttcacagtaaatgttccctcggataaatcaaat |
43973515 |
T |
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| Q |
121 |
aatgactcggttttgatgagatcaagggttgtggaatt |
158 |
Q |
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| T |
43973514 |
aaagactcagttttgacaagatcaagggctgtggaatt |
43973477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 8952173 - 8952102
Alignment:
| Q |
21 |
tttgcaaatagaagagaatgaactgaaagaaacattctcaggaacatcatggaacaaaggaacacctctcac |
92 |
Q |
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| T |
8952173 |
tttgcatatagcagagacagaactaaaaggaacactgttaggaacatcatggaacaaaggaacacctttcac |
8952102 |
T |
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