View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19374_low_4 (Length: 369)
Name: NF19374_low_4
Description: NF19374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19374_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 200 - 365
Target Start/End: Original strand, 29176435 - 29176600
Alignment:
| Q |
200 |
tgtagtgcactgatctcagtatttataattgcatagctcatctgttccatttacattattattccacacccaaacacaaatatactttctttcattctca |
299 |
Q |
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| T |
29176435 |
tgtagtgcactgatctcagtatttataattgcatagctcatctgttccatttacattattattccacacccaaacacaaatatactttcttttattctca |
29176534 |
T |
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| Q |
300 |
ccaccatggttctctcaaagacagcctccgagtctgatgtctctgtccactcaacctttgcttctc |
365 |
Q |
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| T |
29176535 |
ccaccatggttctctcaaagacagcctccgagtctgatgtctctgtccactcaacctttgcttctc |
29176600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 29176246 - 29176308
Alignment:
| Q |
20 |
cacatgtgattgtgaaagatcagtgtaaccaatttaataaagcaacacgcggtagaatgagtc |
82 |
Q |
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| T |
29176246 |
cacatgtgattgtgaaagatcagtgtaaccattttaataaagcaacacgcggtagaatgagtc |
29176308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 29176330 - 29176402
Alignment:
| Q |
96 |
gtagtggtagaacgagtctttgactttacattannnnnnngaaaaatg-tttgattggtcctttaacatcata |
167 |
Q |
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| T |
29176330 |
gtagtggtagaacgagtctttgactttacattatttttttgaaaaatgttttgattggtcctttaacatcata |
29176402 |
T |
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