View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19375_high_1 (Length: 531)
Name: NF19375_high_1
Description: NF19375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19375_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 48 - 515
Target Start/End: Original strand, 13442780 - 13443247
Alignment:
| Q |
48 |
gcttacattggaaatcctaagtaagatgatttatggctaaaacagaaattacacttagcaacaacatctcattgtttcgagtatggattggtttgggatc |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13442780 |
gcttacattggaaatcctaagtaagatgatttatggctaaaacagaaattacacttagcaacaacatctcattgtttcgagtatggattggtttgggatc |
13442879 |
T |
|
| Q |
148 |
aaattctggcttttcattttgaatagctttgtcacatttatcagctcctataccagcagatactgcatcagctattgaagtttgaagatccttatccaag |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13442880 |
aaattctggcttttcattttgaatagctttgtcacatttatcagctcctataccagcagatactgcatcagctattgaagtttgaagatccttatccaag |
13442979 |
T |
|
| Q |
248 |
tcactgaatgaactttcaaatgctgcaacagtagttgttatcaattgagtagcacatattttcacagcttgatcattgggaaannnnnnngcctttccca |
347 |
Q |
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| T |
13442980 |
tcactgaaagaactttcaaatgctgcaacagtagttgttatcaattgagtagcacatattttcacagcttgatcattgggaaatttttttgcctttccca |
13443079 |
T |
|
| Q |
348 |
caagatacacttcataagattttgcttcctttattgcaaaatccaagatatatactgagagttcatgataattttcggatgcgacaattcttttgtcacg |
447 |
Q |
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| T |
13443080 |
caagatacacttcataagattttgcttcctttattgcaaaatccaagatatatactgagagttcatgataattttcggatgcgacaattcttttgtcacg |
13443179 |
T |
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| Q |
448 |
tttcaaaagatccaagcaatcttgagaatattttcgggtctcactgcataagttttcatacaacttga |
515 |
Q |
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| T |
13443180 |
tttcaaaagatccaagcaatcttgagaatattttcgggtctcactgcataagttttcatacaacttga |
13443247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 64 - 513
Target Start/End: Original strand, 13446730 - 13447182
Alignment:
| Q |
64 |
ctaagtaagatgatttatggctaaaacagaaattacacttagcaacaacatctcattgtttcgagtatggattggtttgggatcaaattctggcttttca |
163 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| || | |||||||||||||||||| |||||||| ||| |||||||||||||||| ||||| |
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| T |
13446730 |
ctaagtaagatgatgtatggctaaaacagaaattacactgagtacaaacatctcattgtttcgaatatggattagttggggatcaaattctggcatttca |
13446829 |
T |
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| Q |
164 |
ttttgaatagctttgtcacatttatcagctcctataccagcagatactgcatcagctattgaagtttgaagatccttatc---caagtcactgaatgaac |
260 |
Q |
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| T |
13446830 |
gcttgaattgctttgtcacaactattagctcctgaagtagcagtttgtgcatcagatattgaactttgaagattcttctcaatcaagtgtctcaatgaac |
13446929 |
T |
|
| Q |
261 |
tttcaaatgctgcaacagtagttgttatcaattgagtagcacatattttcacagcttgatcattgggaaannnnnnngcctttcccacaagatacacttc |
360 |
Q |
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| T |
13446930 |
ttacaaatgatgcaagagtacctattaagaattgatttgcacatttttttacagcttgatcattgggaaattgttttgactttccgccaagataccctag |
13447029 |
T |
|
| Q |
361 |
ataagattttgcttcctttattgcaaaatccaagatatatactgagagttcatgataattttcggatgcgacaattcttttgtcacgtttcaaaagatcc |
460 |
Q |
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||| ||| ||| ||||||||||| ||||||||||||| | ||||||| || ||||||||| || |||||||||| | | ||| | |||||||||||| |
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| T |
13447030 |
atatgatgttgactcctttattgccaaatccaagatattttctgagagatcttgataatttatggctgcgacaattttgtcgtcgcctttcaaaagatct |
13447129 |
T |
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| Q |
461 |
aagcaatcttgagaatattttcgggtctcactgcataagttttcatacaactt |
513 |
Q |
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| T |
13447130 |
aagcaatcttgagaatattttcgtgcctcactgcataactcttcatacaactt |
13447182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 65 - 515
Target Start/End: Original strand, 13437595 - 13438045
Alignment:
| Q |
65 |
taagtaagatgatttatggctaaaacagaaattacacttagcaacaacatctcattgtttcgagtatggattggtttgggatcaaattctggcttttcat |
164 |
Q |
| |
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||||||||||||||||| | |||| |||| |||||| || || |||||||||||||| || ||||||||||| ||||||||| ||||||||||| |
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| T |
13437595 |
taagtaagatgatttatagataaagaagaagctacactaagtaaaaacatctcattgttatgaacatggattggttggggatcaaaacttggcttttcat |
13437694 |
T |
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| Q |
165 |
tttgaatagctttgtcacatttatcagctcctataccagcagatactgcatcagctattgaagtttgaagatccttatccaagtcactgaatgaactttc |
264 |
Q |
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| T |
13437695 |
tttgaatagctctgtcacaattatcagctcctatactagcagtttgtgcataatctcttgaactttgaggattcgtatccaacttactcaatgaactttc |
13437794 |
T |
|
| Q |
265 |
aaatgctgcaacagtagttgttatcaattgagtagcacatattttcacagcttgatcattgggaaannnnnnngcctttcccacaagatacacttcataa |
364 |
Q |
| |
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| T |
13437795 |
aaataaagcaatagtagtttttaagaattcatttgcacattttttgagagctttatcattgggaaattgttttgcctttcccacaagataatcttgaaaa |
13437894 |
T |
|
| Q |
365 |
gattttgcttcctttattgcaaaatccaagatatatactgagagttcatgataattttcggatgcgacaattcttttgtcacgtttcaaaagatccaagc |
464 |
Q |
| |
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| || ||| || |||||| ||||||||||| ||| |||||| |||||||||||| || | | || ||| | | ||||| ||||||||||||||||| |
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| T |
13437895 |
gtttgtgcctcaactattgccaaatccaagatgtattttgagaggtcatgataatttgtggctcctactattttgtagtcacctttcaaaagatccaagc |
13437994 |
T |
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| Q |
465 |
aatcttgagaatattttcgggtctcactgcataagttttcatacaacttga |
515 |
Q |
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| T |
13437995 |
attcttgagagtatttccgggcatcattgcatacctcttcatacaacttga |
13438045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 13439121 - 13439213
Alignment:
| Q |
128 |
gtatggattggtttgggatcaaattctggctttt---cattttgaatagctttgtcacatttatcagctcctataccagcagatactgcatca |
217 |
Q |
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| T |
13439121 |
gtatggattggaaggggatgaaattctggcttttgatcattttgaatagctttgtcataattatcagctccaagactagcagtttctgcatca |
13439213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 7665832 - 7665791
Alignment:
| Q |
114 |
tctcattgtttcgagtatggattggtttgggatcaaattctg |
155 |
Q |
| |
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| T |
7665832 |
tctcattgtttcgaatatggattagttggggatcaaattctg |
7665791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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