View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19375_high_2 (Length: 501)
Name: NF19375_high_2
Description: NF19375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19375_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 41314909 - 41315200
Alignment:
| Q |
5 |
gagtgagatgaatgatacgcatcttgtacaaattcaccataacgaactacctctcgacgaagattctcgtcgagaggatctaacattcctttccaatcat |
104 |
Q |
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| T |
41314909 |
gagtgaaaagaatgatacgcgtcttgtacaaattcaccataacgaactacctctcgacgaagattctcgtcgagaggatctaacattcctttccaatcat |
41315008 |
T |
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| Q |
105 |
tgcagccatggtattctctccaatgactgccaagcgtgttacggggagaatactcagctgttttgaaaaggagacggtggagatttttgaggtgatgcgg |
204 |
Q |
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| T |
41315009 |
tgcagccatggtattctctccaatgactgccaagcgtgttacggggagaatactcagctgttttgaaaaggagacggtggagatttttgaggtgatgcgg |
41315108 |
T |
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| Q |
205 |
tgacatttgatcatctattgttttcttatccgatgaccataagtttgatagatcaagattttctaaaatgttctttgttttcttctcaacta |
296 |
Q |
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| T |
41315109 |
tgacatttgatcatctattgttttcttatccgatgaccataagtttgatagatcaagattttctaaaatgttctttgttttcttctcaacta |
41315200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 344 - 482
Target Start/End: Original strand, 41315263 - 41315401
Alignment:
| Q |
344 |
agaaatttatcaagattagagagatgtaacttggtggaagaaagtggtttacgaggtgggagttggttgttaatggaagaggatgatcggcatgtgaagg |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41315263 |
agaaatttatcaagattagagagatgtaacttggtggaagaaagtggtttacgaggtgggagttggttattaatggaagaggatgatcggcatgtgaagg |
41315362 |
T |
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| Q |
444 |
tggattgttgtctagtttggaacatgttaaggttgtgtg |
482 |
Q |
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| T |
41315363 |
tggattgttgtctagtttggaacatgttaaggttgtgtg |
41315401 |
T |
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