View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19375_high_4 (Length: 282)
Name: NF19375_high_4
Description: NF19375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19375_high_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 32 - 282
Target Start/End: Original strand, 41795502 - 41795754
Alignment:
| Q |
32 |
agaagaagaaagtcgtgtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaagatcttagaattgatgctagacgg |
131 |
Q |
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| T |
41795502 |
agaagaagaaagtagtgtgttaagtacagaagagttaaacaaaaaattcgaagatttcattagaaagatgaaagaagatctaagaattgatgctagacgg |
41795601 |
T |
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| Q |
132 |
catttaatcatggtttgatttaagcaacaa--aaccatgatcttctttcttttgatcatgctattttagatgtatgcatccattaaattttgcaaagatt |
229 |
Q |
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| T |
41795602 |
catttagtcatggtttgatttaagtaaacagcaaccatgatcttctttcttttgatcatgctattttagatgtatgcatccattaaattttgcaaagatt |
41795701 |
T |
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| Q |
230 |
tccccatattaacaaagagcaagtttacatgccaaatttcttttttaataagt |
282 |
Q |
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| T |
41795702 |
tccccatattaacaaagagcaagtttacatgccaaatttcttttttaataagt |
41795754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 41760690 - 41760968
Alignment:
| Q |
9 |
gaagaatatgaagaatattatgtagaagaagaaagtcgtgtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaag |
108 |
Q |
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| T |
41760690 |
gaagaagatgaagaatattatgtagaagaagaaagttgtgtgctaagtacagaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaag |
41760789 |
T |
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| Q |
109 |
atcttagaattgatgctagacggcatttaatcatggtttgatttaagcaacaaaa-ccatgatcttctttcttttgatcatgc------tatt------- |
194 |
Q |
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| T |
41760790 |
atcttagaattgatgctagacggcatttaatcatggtttgatttaagcaacaaaacccatgatcttctttcttttgatcatgcttcttgtattttagaaa |
41760889 |
T |
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| Q |
195 |
ttagatgtatgcatccattaaattttgcaaagatttccccatattaacaaagagcaagtttacatgccaaatttcttttt |
274 |
Q |
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| T |
41760890 |
ttagatgtatgcatccattaaattttgcaaagattt-cagatattaacaaagagcaagtttccatgccaaatttcttttt |
41760968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 23507400 - 23507455
Alignment:
| Q |
48 |
gtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaa |
103 |
Q |
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| T |
23507400 |
gtgctaagcactgaggagttgaacaaaaaatttgatgacttcattaaaaagatgaa |
23507455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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