View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19375_high_6 (Length: 262)
Name: NF19375_high_6
Description: NF19375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19375_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 53444997 - 53444770
Alignment:
| Q |
18 |
atacattgagttattaaattgtattttatagacatagttgtctccttccaatccaagtttcgtatctacacaactgagtttggtatcatttggtcacatt |
117 |
Q |
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| T |
53444997 |
atacattgaattattaaattgtattttatagacatagttgtctccttccaatccaagtttcgtatctacacaactgagtttggtatcatttggtcacatt |
53444898 |
T |
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| Q |
118 |
ttgctttaattattttgatgtttaaaagagtttaattttgatataatattggtgtaaaaagttttaatttatcaacaaaccacaatcaatcatatgttta |
217 |
Q |
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| T |
53444897 |
ttgctttaattattttgatgtttaaaagagtttaattgtgatataatattggtgtaaaaagttttaatttatcaacaaaccacaaccaatcatatgttta |
53444798 |
T |
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| Q |
218 |
attttattttgaacaaatcatatgttta |
245 |
Q |
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| T |
53444797 |
attttattttgaacaaatcatatgttta |
53444770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 46936953 - 46937024
Alignment:
| Q |
143 |
aagagtttaattttgatataatattggtgtaaaaagttttaatttatcaacaaaccacaatcaatcatatgt |
214 |
Q |
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| T |
46936953 |
aagagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgt |
46937024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 8809987 - 8809951
Alignment:
| Q |
145 |
gagtttaattttgatataatattggtgtaaaaagttt |
181 |
Q |
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| T |
8809987 |
gagtttaattttgatatgctattggtgtaaaaagttt |
8809951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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