View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19375_low_10 (Length: 233)
Name: NF19375_low_10
Description: NF19375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19375_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 34714677 - 34714484
Alignment:
| Q |
14 |
aatattggaaccttaggctagaaaacatgtaatacaattgtattacatacatatacttgatccaatatgaggatctcattcccatttccaatttcacagc |
113 |
Q |
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| T |
34714677 |
aatattggaaccttag-ctagaaaacatgtaatacaattgtattacatttatatacttgatccaatatgaggatctcattcccatttccaatttccc--- |
34714582 |
T |
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| Q |
114 |
aagtagaatcatgactctgatacaactagttggggagttcggaggagcgttgataccaacaatatatcaatgctccacaaccataagagagtgacacatc |
213 |
Q |
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| T |
34714581 |
----agaatcaggactctgatacaactagttggagagttcggaggagcgtcgataccaacaacatatcaatgctccacgaccacaagagagtgacacatc |
34714486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 59 - 215
Target Start/End: Complemental strand, 34835093 - 34834937
Alignment:
| Q |
59 |
catacatatacttgatccaatatgaggatctcattcccatttccaatttcacagcaagtagaatcatgactctgatacaactagttggggagttcggagg |
158 |
Q |
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|||| |||||||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
34835093 |
catatatatacttgatccaatatcaggatctcattcctattttcaatttctcagcaagtagaatcaggactctgatacaactagttggagagttcggagg |
34834994 |
T |
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| Q |
159 |
agcgttgataccaacaatatatcaatgctccacaaccataagagagtgacacatcat |
215 |
Q |
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| T |
34834993 |
agcgtcgataccaacaacatatcaatgttccaggaccaaaagagagtgacacatcat |
34834937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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