View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19375_low_6 (Length: 270)
Name: NF19375_low_6
Description: NF19375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19375_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 41796084 - 41795841
Alignment:
| Q |
16 |
agttttatgaatcaagaagctttcctgagtttgaaatgactcctaacaattcctaagctataataccagttcctcgagccttttagataatgtgtttcgg |
115 |
Q |
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| T |
41796084 |
agttttatgaatcaagaagctttcctgagtttgaaatgactcctaacaattcctaagctataataccagttcctcgagccttttagataatgtgtttcgg |
41795985 |
T |
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| Q |
116 |
ttctttatatcattatatgtatatatggtcatggactaatctcatattagtatattccatttattattaacttcttgtttaaggatattccnnnnnnnnn |
215 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41795984 |
ttctttatatcattat-tgtatatatggtcatggactaatctcatattagtatattccatttattattaacttcttgcttaaggatattccatttttttt |
41795886 |
T |
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| Q |
216 |
ctccatatacatggcatcttgttaatcatactattatcagtattat |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41795885 |
-tccatatacatggcatcttgttaatcatactattatcattattat |
41795841 |
T |
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