View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19376_high_10 (Length: 239)
Name: NF19376_high_10
Description: NF19376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19376_high_10 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 31214798 - 31214577
Alignment:
| Q |
18 |
agatccaccagaacatatttgaggtggcaaatggccagtaaaatcattattgtctaattggaacatattccagttggtaaagttatatagactttgtgga |
117 |
Q |
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| T |
31214798 |
agatccaccagaacatatttgaggtggcaaatggccagtaaaatcattcccgtctaatagcaacctattccagttggtaaagttatataggctttgtgga |
31214699 |
T |
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| Q |
118 |
atgctaccatgaagtttattgatgcgtagtcccaagattattagctttgtcatatttccaattgtttccggaatagttccagaaagattgttttcagaca |
217 |
Q |
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| T |
31214698 |
atgctaccatgaagtttattggtgcgtagtcccaagattattagcgttgtcatatttccaattgtttccggaatagttccagaaagattgttttcagaca |
31214599 |
T |
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| Q |
218 |
aatcgagctttaacacattgat |
239 |
Q |
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| T |
31214598 |
aatcgaggattaacacattgat |
31214577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 31183103 - 31183059
Alignment:
| Q |
21 |
tccaccagaacatatttgaggtggcaaatggccagtaaaatcatt |
65 |
Q |
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| T |
31183103 |
tccaccagaacatatttgagacggcaaatggccaacaaaatcatt |
31183059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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