View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19376_high_11 (Length: 238)

Name: NF19376_high_11
Description: NF19376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19376_high_11
NF19376_high_11
[»] chr1 (12 HSPs)
chr1 (1-236)||(47770699-47770934)
chr1 (157-237)||(47774606-47774686)
chr1 (152-237)||(47711875-47711960)
chr1 (147-223)||(6515434-6515510)
chr1 (152-237)||(47716626-47716711)
chr1 (152-237)||(47744390-47744475)
chr1 (147-223)||(6503391-6503467)
chr1 (147-223)||(6511011-6511087)
chr1 (137-223)||(6498062-6498148)
chr1 (152-221)||(47758773-47758842)
chr1 (141-237)||(6524998-6525094)
chr1 (152-212)||(47689857-47689917)
[»] chr5 (6 HSPs)
chr5 (144-237)||(27369129-27369222)
chr5 (152-221)||(28829285-28829354)
chr5 (152-221)||(28854962-28855031)
chr5 (152-221)||(28860321-28860390)
chr5 (3-80)||(27368797-27368876)
chr5 (152-221)||(28874891-28874960)
[»] scaffold0341 (2 HSPs)
scaffold0341 (147-223)||(12692-12768)
scaffold0341 (163-223)||(5089-5149)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 47770934 - 47770699
Alignment:
Q  1 taatatcgtagcgcttttgccaattcagttgtgctttcctggttggatctacttataaccaagatcatatgggtttcaaatttgatttagtcgttagtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47770934 taatatcgtagcgcttttgccaattcagttgtgctttcctggttggatctacttataaccaagatcatatgagtttcaaatttgatttagtcgttagtaa 47770835  T
Q  101 tttgtcttataagtaattgtgtatcattctaactatatagatattcaaacgtaccaaatatgaagtaatcaagacttttatttgtaacaaattcataaat 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47770834 tttgtcttataagtaattgtgtatcattctaactatgtagatattcaaacgtaccaaatatgaagtaatcaagacttttatttgtaacaaattcataaat 47770735  T
Q  201 aagaagtctttcactcccttctaaactgaaaccaag 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  47770734 aagaagtctttcactcccttctaaactgaaaccaag 47770699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 47774686 - 47774606
Alignment:
Q  157 aatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttctaaactgaaaccaagt 237  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  47774686 aatatgaagtaatcaagacttttatttgtaacatattcataaataagcagtttttctctcccttctaaactgaaaccaagt 47774606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 47711875 - 47711960
Alignment:
Q  152 taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttctaaactgaaaccaagt 237  Q
    |||||||||| || ||||||||||||||||| | |||||||||||| ||||| | |||||| || ||||||| ||  |||||||||    
T  47711875 taccaaatataaaataatcaagacttttattcggaacaaattcatagataagcaatctttctcttccttctagacaaaaaccaagt 47711960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 6515434 - 6515510
Alignment:
Q  147 aaacgtaccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttcta 223  Q
    |||| ||||||| || ||||||||||||||||||||   |||||| || || ||||| |||||||||||||||||||    
T  6515434 aaacctaccaaaaataaagtaatcaagacttttattatgaacaaactcgtatataagtagtctttcactcccttcta 6515510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 47716626 - 47716711
Alignment:
Q  152 taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttctaaactgaaaccaagt 237  Q
    |||||||||| || ||||||||||||||||| | |||||||||||| | ||| | |||||| || ||||||| ||  |||||||||    
T  47716626 taccaaatataaaataatcaagacttttattaggaacaaattcatagaaaagcaatctttctcttccttctagacaaaaaccaagt 47716711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 47744390 - 47744475
Alignment:
Q  152 taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttctaaactgaaaccaagt 237  Q
    |||||||||| || ||||||||||||||||||| |||| ||||||| | ||| | |||||| || ||||||| ||  |||||||||    
T  47744390 taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagt 47744475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 6503391 - 6503467
Alignment:
Q  147 aaacgtaccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttcta 223  Q
    |||| ||||||| || ||||||||||||||||||||   |||||| ||||| | |||||||||||| || |||||||    
T  6503391 aaacctaccaaaaataaagtaatcaagacttttattacaaacaaactcatatacaagaagtctttctcttccttcta 6503467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 6511011 - 6511087
Alignment:
Q  147 aaacgtaccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttcta 223  Q
    |||| ||||||| || ||||||||||||||||||||   |||||| ||||| ||||| |||||||| || |||||||    
T  6511011 aaacctaccaaaaataaagtaatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttcta 6511087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 6498062 - 6498148
Alignment:
Q  137 atagatattcaaacgtaccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttcta 223  Q
    ||||||||| |||| ||||||| ||||| ||||| |||||||| |||  |||||||||||| | ||| | |||||| || |||||||    
T  6498062 atagatattaaaacttaccaaaaatgaaataatcgagacttttgttttgaacaaattcatatacaagtactctttctcttccttcta 6498148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 47758773 - 47758842
Alignment:
Q  152 taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttc 221  Q
    |||||||||| || ||||||||||||||||| | |||| ||||||||| ||| | |||||| || |||||    
T  47758773 taccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttc 47758842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 6525094 - 6524998
Alignment:
Q  141 atattcaaacgtaccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttctaaactgaaaccaagt 237  Q
    ||||| |||| ||||||| | ||||||||| || || |||||   |||||||||||| | ||| |||||||| || ||||||| || ||||||||||    
T  6525094 atattaaaacctaccaaaaaggaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagt 6524998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 47689917 - 47689857
Alignment:
Q  152 taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttc 212  Q
    ||||||||||||  ||||||||||||||||| |  ||||| |||||||| || ||||||||    
T  47689917 taccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttc 47689857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 27369129 - 27369222
Alignment:
Q  144 ttcaaacgtaccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttctaaactgaaaccaagt 237  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| || ||||||||||    
T  27369129 ttcaaacttaccaaatatgaagtaatcaagacttttatttgaaacaaattcataaataagtagtctttctctcccttctagacagaaaccaagt 27369222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 28829285 - 28829354
Alignment:
Q  152 taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttc 221  Q
    |||||||||||||||| |||||||||||||| | |||||||||||| | ||| | |||||| ||||||||    
T  28829285 taccaaatatgaagtagtcaagacttttattaggaacaaattcatagacaagtaatctttctctcccttc 28829354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 28854962 - 28855031
Alignment:
Q  152 taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttc 221  Q
    |||||||||||||||| |||||||||||||| | |||||||||||| |  || |||||||| ||||||||    
T  28854962 taccaaatatgaagtagtcaagacttttattgggaacaaattcatagactagtagtctttctctcccttc 28855031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 28860321 - 28860390
Alignment:
Q  152 taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttc 221  Q
    |||||||||||||||| |||||||||||||| | || ||||||||| | ||| |||||||| ||||||||    
T  28860321 taccaaatatgaagtagtcaagacttttattgggaataaattcatagacaagtagtctttctctcccttc 28860390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 27368797 - 27368876
Alignment:
Q  3 atatcgtagcgcttttgccaattcagttgtgctttcctggttggatctac--ttataaccaagatcatatgggtttcaaa 80  Q
    |||| ||||||| |||||||||||| ||||| |||||| || ||||||||   |||||||| ||||||||| ||||||||    
T  27368797 atattgtagcgcgtttgccaattcaattgtgttttccttgtcggatctacatatataaccatgatcatatgagtttcaaa 27368876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 28874891 - 28874960
Alignment:
Q  152 taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttc 221  Q
    |||| ||||||||||| || ||||||||||| | || ||||||||| | ||| |||||||| ||||||||    
T  28874891 taccgaatatgaagtagtctagacttttattgggaataaattcatagacaagtagtctttctctcccttc 28874960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 12692 - 12768
Alignment:
Q  147 aaacgtaccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttcta 223  Q
    |||| ||||||| || ||||||||||||||||||||   |||||| ||||| ||||| |||||||| || |||||||    
T  12692 aaacctaccaaaaataaagtaatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttcta 12768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 5089 - 5149
Alignment:
Q  163 aagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttcta 223  Q
    ||||||||||||||||||||   |||||| ||||| | |||||||||||| || |||||||    
T  5089 aagtaatcaagacttttattacaaacaaactcatatacaagaagtctttctcttccttcta 5149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University