View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19376_high_6 (Length: 311)
Name: NF19376_high_6
Description: NF19376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19376_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 36471819 - 36472087
Alignment:
| Q |
20 |
aagctttctcaccaaatgttgcccaacaagtgcagcaacagtggctacaactacaaagtaaagagctgcaagaataatcaaacgttgaatattaaatgtt |
119 |
Q |
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| T |
36471819 |
aagctttctcaccaaatgttgcccaacaagtgcagcaacagtggctacaactacaaagtaaagagctgcaagaataatcaaacgttgaatattaaatgtt |
36471918 |
T |
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| Q |
120 |
ttagagnnnnnnnnnnttcaaatattaaaatt-atccatgcacttaccatatggaattggaaaacgtttcagaaggtaatattctaccacagacatagat |
218 |
Q |
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| T |
36471919 |
ttagagaaaa---------aaaaattcaaatttatccatgcacttaccatatggaattggaaaacgtttcagaaggtaatattccaccacagacatagat |
36472009 |
T |
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| Q |
219 |
gcagaaaatgtcattgcaaaagtggatgtagcacttgccaccttaatagaaaattccccaatcaaaacacaaacatat |
296 |
Q |
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| T |
36472010 |
gcagaaaatgtcattgcaaaagtggatgtagcacttgccaccttaatagaaaattccccaatcaaaacacaaacatat |
36472087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 136 - 273
Target Start/End: Original strand, 36462797 - 36462934
Alignment:
| Q |
136 |
ttcaaatattaaaattatccatgcacttaccatatggaattggaaaacgtttcagaaggtaatattctaccacagacatagatgcagaaaatgtcattgc |
235 |
Q |
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| T |
36462797 |
ttcaaatattaaatttatccatacacttaccatatggaatgggaaaacgtttcagaaggtaatattccaccacagacatagatgcagaaaatgtcattgc |
36462896 |
T |
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| Q |
236 |
aaaagtggatgtagcacttgccaccttaatagaaaatt |
273 |
Q |
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| T |
36462897 |
aaaagtggatgtagcacttgataccttcaaagaaaatt |
36462934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 36462592 - 36462688
Alignment:
| Q |
20 |
aagctttctcaccaaatgttgcccaacaagtgcagcaacagtggctacaactacaaagtaaagagctgcaagaataatcaaacgttgaatattaaat |
116 |
Q |
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| T |
36462592 |
aagctttctcaccaaatgttgcccaacaagtgcagcaacagtggctacaactacaaagtaaagagctgcaagaataatcaaacgttgaatattaaat |
36462688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 50750102 - 50750005
Alignment:
| Q |
164 |
accatatggaattggaaaacgtttcagaaggtaatattctaccacagacatagatgcagaaaatgtcattgcaaaagtggatgtagcacttgccacct |
261 |
Q |
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| T |
50750102 |
accataaggaactggaaatcgtttcagcaagtagtattccacaacagacatagacgaggagaatgtcattgcaaaagtggctgtggcgcttgacacct |
50750005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 50812709 - 50812788
Alignment:
| Q |
164 |
accatatggaattggaaaacgtttcagaaggtaatattctaccacagacatagatgcagaaaatgtcattgcaaaagtgg |
243 |
Q |
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| T |
50812709 |
accataaggaatcggaaatcgtttcagcaaatagtattctacaacagacatagacgaggagaatgtcattgcaaaagtgg |
50812788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 50863155 - 50863076
Alignment:
| Q |
164 |
accatatggaattggaaaacgtttcagaaggtaatattctaccacagacatagatgcagaaaatgtcattgcaaaagtgg |
243 |
Q |
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| T |
50863155 |
accataaggaatcggaaatcgtttcagcaaatagtattctacaacagacatagacgaggagaatgtcattgcaaaagtgg |
50863076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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