View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19376_high_7 (Length: 283)
Name: NF19376_high_7
Description: NF19376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19376_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 4031357 - 4031119
Alignment:
| Q |
18 |
atgaattaagtttgttttgactnnnnnnnntcacttgttatttatgctaccatcttgcaatatgtgtgtgtcactaatgctaatgagtacagtaaagctc |
117 |
Q |
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| T |
4031357 |
atgaattaagtttgttttgactaaaaaaaatcacttgttatttatgcttccatcttgcaatatgtgtgtgtcactaatgctaatgagtacagcaaagctc |
4031258 |
T |
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| Q |
118 |
ttcaaatcttctgtcctaaaggaaaagcaaacatatgctaaaagcattctgctacatatgctagccgagatgattttgtttcgaaaattgtttctttgtt |
217 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031257 |
ttcaaactttctgtcctaaaggaaaatcaaacatatgctaaaagcattctactacatatgctagccgagatgattttgtttcgaaaattgtttctttgtt |
4031158 |
T |
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| Q |
218 |
ctctttccaattgggataaattgtaaatgaatgaatttt |
256 |
Q |
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| T |
4031157 |
ctctttccaattgggataaattgtaaatgaatgaatttt |
4031119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 48 - 256
Target Start/End: Original strand, 42394328 - 42394536
Alignment:
| Q |
48 |
tcacttgttatttatgctaccatcttgcaatatgtgtgtgtcactaatgctaatgagtacagtaaagctcttcaaatcttctgtcctaaaggaaaagcaa |
147 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| |
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| T |
42394328 |
tcacttgttatttatgcttccatcttgcaatatgtgtgtgtcactaatgctaatgagtacagcaaagctcttcaaattttctgtcctaaaggaaaatcaa |
42394427 |
T |
|
| Q |
148 |
acatatgctaaaagcattctgctacatatgctagccgagatgattttgtttcgaaaattgtttctttgttctctttccaattgggataaattgtaaatga |
247 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42394428 |
acatatgctaaaagcattctgctacatattcttgccgagatgattttgtttcgaaaattgtttctttgttctctttccaattgggataaattgtaaatga |
42394527 |
T |
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| Q |
248 |
atgaatttt |
256 |
Q |
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||||||||| |
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| T |
42394528 |
atgaatttt |
42394536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 48 - 256
Target Start/End: Complemental strand, 33304808 - 33304600
Alignment:
| Q |
48 |
tcacttgttatttatgctaccatcttgcaatatgtgtgtgtcactaatgctaatgagtacagtaaagctcttcaaatcttctgtcctaaaggaaaagcaa |
147 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |
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| T |
33304808 |
tcacttgttatttatgcttccatcttgcaatatgtgtgagtcactaatgctaatgagtacagcaaagctcttcaaactttctgtcctaaaggaaaatcaa |
33304709 |
T |
|
| Q |
148 |
acatatgctaaaagcattctgctacatatgctagccgagatgattttgtttcgaaaattgtttctttgttctctttccaattgggataaattgtaaatga |
247 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33304708 |
acatatgctaaaagcattctgctacatattctagccgagatgattttgtttcgaaaattgtttctttgttctctttccaattgggataaattgtaaatga |
33304609 |
T |
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| Q |
248 |
atgaatttt |
256 |
Q |
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||||||||| |
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|
| T |
33304608 |
atgaatttt |
33304600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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