View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19376_high_9 (Length: 239)
Name: NF19376_high_9
Description: NF19376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19376_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 39049686 - 39049906
Alignment:
| Q |
1 |
catcatttctcaccaacatgattaatttgattttatccatgcacgttttacaaacttagaatnnnnnnntactccattaattttgtaggaaaataacaag |
100 |
Q |
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| T |
39049686 |
catcatttctcaccaacatgattaatttgattttatccatgcacgttttacaaacttagaataaaaaaatactccattaattttgtaggaaaataacaag |
39049785 |
T |
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| Q |
101 |
ggggcatttgactttatttttgtggatgctgacaagaataactacataaactatcataagagggtgcttgatcttgtgaaagttggaggattgattggat |
200 |
Q |
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| T |
39049786 |
ggggcatttgactttatttttgtggatgctgacaagaataactacataaactatcataagagggtgcttgatcttgtgaaagttggaggattgattggat |
39049885 |
T |
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| Q |
201 |
atgataataccttatgggttg |
221 |
Q |
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| T |
39049886 |
atgataataccttatgggttg |
39049906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 217
Target Start/End: Original strand, 39055836 - 39055980
Alignment:
| Q |
73 |
tccattaattttgtaggaaaataacaagggggcatttgactttatttttgtggatgctgacaagaataactacataaactatcataagagggtgcttgat |
172 |
Q |
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| T |
39055836 |
tccattaattttgcaggaaaataacaagggggcatttgattttgtttttgtggatgctgataaggataattacttaaactatcatgagaggataattgat |
39055935 |
T |
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| Q |
173 |
cttgtgaaagttggaggattgattggatatgataataccttatgg |
217 |
Q |
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| T |
39055936 |
cttgttaaagttggaggattgattggatatgataatactttatgg |
39055980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 217
Target Start/End: Original strand, 39238114 - 39238258
Alignment:
| Q |
73 |
tccattaattttgtaggaaaataacaagggggcatttgactttatttttgtggatgctgacaagaataactacataaactatcataagagggtgcttgat |
172 |
Q |
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| T |
39238114 |
tccatcaattttgcaggaaaataacaaagggacgtttgactttgtttttgtggatgctgataagaataactacttaaactatcacgtgaggatgattgat |
39238213 |
T |
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| Q |
173 |
cttgtgaaagttggaggattgattggatatgataataccttatgg |
217 |
Q |
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| T |
39238214 |
cttgttaaggttgggggattaatcggttacgataacaccttatgg |
39238258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 217
Target Start/End: Complemental strand, 39291282 - 39291152
Alignment:
| Q |
87 |
aggaaaataacaagggggcatttgactttatttttgtggatgctgacaagaataactacataaactatcataagagggtgcttgatcttgtgaaagttgg |
186 |
Q |
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| T |
39291282 |
aggaatataacaaggagacatttgatttcgtttatgtggatgctgataaggataactacattaactatcacaagagggtggttgagcttgttaaagttgg |
39291183 |
T |
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| Q |
187 |
aggattgattggatatgataataccttatgg |
217 |
Q |
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| T |
39291182 |
aggattggttgcatatgacaacaccttatgg |
39291152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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