View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19376_low_13 (Length: 230)

Name: NF19376_low_13
Description: NF19376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19376_low_13
NF19376_low_13
[»] chr8 (6 HSPs)
chr8 (1-213)||(32703963-32704180)
chr8 (8-206)||(32627746-32627945)
chr8 (125-206)||(32709802-32709883)
chr8 (5-40)||(32709681-32709716)
chr8 (22-58)||(7293445-7293481)
chr8 (5-57)||(7297902-7297954)
[»] chr4 (1 HSPs)
chr4 (9-213)||(5811392-5811597)
[»] chr6 (3 HSPs)
chr6 (89-206)||(21943676-21943793)
chr6 (5-213)||(20115859-20116068)
chr6 (8-58)||(21943606-21943656)
[»] chr3 (1 HSPs)
chr3 (9-182)||(27736711-27736885)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 32703963 - 32704180
Alignment:
Q  1 ttttattaggaaaaatcctgccatagaaggaaccaggaaccccaaagaagtagcaaggtgccatttcggtttccatt-cagcctgtagattttctttgaa 99  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  32703963 ttttattaggaaaaatcctgccatagaaggaaccgggaaccccaaagaagtagcaaggtaccatttcggtttccatttcagcctgtagattttctttgaa 32704062  T
Q  100 catgtcgagggacctaaatacattgttgaagtcgttccctagtagatcgttcaaaaagacct----tatattcaggagatttatgattaagctctcgaca 195  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  32704063 cgtgtcgagggacctaaatacattgttgaagtcgttccctggtagatcgttcaaaaagaccttatatatattcaggagatttatgattaagctctcgaca 32704162  T
Q  196 aatcttttccaaaacctt 213  Q
    ||||||||||| ||||||    
T  32704163 aatcttttccacaacctt 32704180  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 32627746 - 32627945
Alignment:
Q  8 aggaaaaatcctgccatagaaggaaccaggaaccccaaagaagtagcaaggtgccatttcggtttccatt-cagcctgtagattttctttgaacatgtcg 106  Q
    ||||||||| || ||||  |||||||||||||| ||  ||||| |||| ||  ||||||| ||  ||||| || |  |||| ||||||||||| |||||     
T  32627746 aggaaaaattctaccatgaaaggaaccaggaactcctgagaagaagcatggacccatttcagtccccatttcatcaagtagtttttctttgaaaatgtca 32627845  T
Q  107 agggacctaaatacattgttgaagtcgttccctagtagatcgttcaaaaagaccttatattcaggagatttatgattaagctctcgacaaatcttttcca 206  Q
    |||||| ||||||   |||||||||| || ||  |||||||||||||| | | | ||||||| ||||||||||||||||| | |||||||| ||||||||    
T  32627846 agggacgtaaatatggtgttgaagtcatttcccggtagatcgttcaaatatatcatatattcgggagatttatgattaagttttcgacaaagcttttcca 32627945  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 32709802 - 32709883
Alignment:
Q  125 ttgaagtcgttccctagtagatcgttcaaaaagaccttatattcaggagatttatgattaagctctcgacaaatcttttcca 206  Q
    ||||||||||| ||  | | ||||||||| |||||||| ||||| ||||||| |||||| | ||||||||||| ||||||||    
T  32709802 ttgaagtcgttacccggcaaatcgttcaagaagaccttgtattcgggagattcatgattcaactctcgacaaagcttttcca 32709883  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 32709681 - 32709716
Alignment:
Q  5 attaggaaaaatcctgccatagaaggaaccaggaac 40  Q
    |||||||||||||||||||||||| |||||||||||    
T  32709681 attaggaaaaatcctgccatagaaagaaccaggaac 32709716  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 7293445 - 7293481
Alignment:
Q  22 catagaaggaaccaggaaccccaaagaagtagcaagg 58  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  7293445 catagaaagaaccaggaacaccaaagaagtagcaagg 7293481  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 7297902 - 7297954
Alignment:
Q  5 attaggaaaaatcctgccatagaaggaaccaggaaccccaaagaagtagcaag 57  Q
    |||||||||||  || | |||||| ||||||||||||||||| ||||||||||    
T  7297902 attaggaaaaactctactatagaaagaaccaggaaccccaaaaaagtagcaag 7297954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 5811392 - 5811597
Alignment:
Q  9 ggaaaaatcctgccatagaaggaaccaggaaccccaaagaagtagcaaggtgccatttcggtttccatt-cagcctgtagattttctttgaacatgtcga 107  Q
    ||||| ||||| | ||| ||||| |||||||| ||| |||||||||||||  ||||||| ||||||||| ||    |||| |||||||||||  |||| |    
T  5811392 ggaaagatcctactataaaaggatccaggaacaccagagaagtagcaaggacccatttcagtttccatttcattacgtagtttttctttgaaggtgtcaa 5811491  T
Q  108 gggacctaaatacattgttgaagtcgttccctagtagatcgttcaaaaagaccttatattcaggagatttatgattaagctctcgacaaatcttttccaa 207  Q
    ||||| ||||||| | |||||| || || ||  ||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||||| |     
T  5811492 gggacataaatacgtcgttgaaatcatttcccggtagatcgttcaaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaac 5811591  T
Q  208 aacctt 213  Q
    ||||||    
T  5811592 aacctt 5811597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 21943676 - 21943793
Alignment:
Q  89 ttttctttgaacatgtcgagggacctaaatacattgttgaagtcgttccctagtagatcgttcaaaaagaccttatattcaggagatttatgattaagct 188  Q
    |||||||||||  | || |||||||||||||| |||||||| ||||| ||  |||||||||||||||| ||||||||||| ||||||| |||||| | ||    
T  21943676 ttttctttgaaggtctcaagggacctaaatacgttgttgaaatcgtttccgggtagatcgttcaaaaataccttatattcgggagattcatgattcaact 21943775  T
Q  189 ctcgacaaatcttttcca 206  Q
    || |||||| ||||||||    
T  21943776 cttgacaaagcttttcca 21943793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 20116068 - 20115859
Alignment:
Q  5 attaggaaaaatcctgccatagaaggaaccaggaaccccaaagaagtagcaaggtgccatttcggtttcca-ttcagcctgtagattttctttgaacatg 103  Q
    |||||| ||||| |||||||| |||||||| ||||| ||| |||||||||||||  ||||||   |||||| ||||      || |||||||||||  ||    
T  20116068 attagggaaaattctgccataaaaggaaccgggaacaccagagaagtagcaaggacccattttattttccaattcattagaaagcttttctttgaaggtg 20115969  T
Q  104 tcgagggacctaaatacattgttgaagtcgttccctagtagatcgttcaaaaagaccttatattcaggagatttatgattaagctctcgacaaatctttt 203  Q
    || |||||| ||||||    |||||||||||| ||   ||||||||||||| |||| | |||||||||||||| |||||| |  |||  ||||| |||||    
T  20115968 tcaagggacttaaatatgccgttgaagtcgtttccggatagatcgttcaaagagacatcatattcaggagattcatgattcaattctatacaaagctttt 20115869  T
Q  204 ccaaaacctt 213  Q
    ||| ||||||    
T  20115868 ccacaacctt 20115859  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 21943606 - 21943656
Alignment:
Q  8 aggaaaaatcctgccatagaaggaaccaggaaccccaaagaagtagcaagg 58  Q
    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||    
T  21943606 aggaaaaattctgccataaaaggaaccgggaacaccaaagaagtagcaagg 21943656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 27736711 - 27736885
Alignment:
Q  9 ggaaaaatcctgccatagaaggaaccaggaaccccaaagaagtagcaaggtgccatttcggtttccatt-cagcctgtagattttctttgaacatgtcga 107  Q
    |||||||| |||||||| || ||||||||||| ||| |||||||||| ||  | ||||  ||||||||| || |  |||| || ||||||||  |||| |    
T  27736711 ggaaaaattctgccataaaatgaaccaggaactccatagaagtagcacgggcctattttagtttccatttcatcacgtagtttctctttgaaggtgtcaa 27736810  T
Q  108 gggacctaaatacattgttgaagtcgttccctagtagatcgttcaaaaagaccttatattcaggagatttatgat 182  Q
    ||||| | ||||| ||||||||||| || ||  ||||||| |||||||| || ||||||||||||||||||||||    
T  27736811 gggacttgaatacgttgttgaagtcatttcccggtagatcattcaaaaatactttatattcaggagatttatgat 27736885  T

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