View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19376_low_2 (Length: 420)

Name: NF19376_low_2
Description: NF19376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19376_low_2
NF19376_low_2
[»] chr4 (20 HSPs)
chr4 (10-413)||(2621028-2621431)
chr4 (151-308)||(2367648-2367805)
chr4 (143-278)||(2486229-2486364)
chr4 (166-261)||(5106333-5106428)
chr4 (143-261)||(5102106-5102224)
chr4 (155-276)||(2547466-2547587)
chr4 (167-288)||(12124770-12124891)
chr4 (164-264)||(2472035-2472135)
chr4 (155-278)||(2491062-2491185)
chr4 (143-261)||(2519155-2519273)
chr4 (143-204)||(2382562-2382623)
chr4 (143-278)||(2525679-2525814)
chr4 (167-308)||(2373212-2373352)
chr4 (68-257)||(2477421-2477604)
chr4 (149-249)||(2391036-2391136)
chr4 (1-278)||(2467316-2467587)
chr4 (71-130)||(2486145-2486204)
chr4 (143-278)||(5035544-5035679)
chr4 (233-275)||(1517029-1517071)
chr4 (193-281)||(12126852-12126940)
[»] chr7 (1 HSPs)
chr7 (164-261)||(2576415-2576512)
[»] chr1 (1 HSPs)
chr1 (164-264)||(15837979-15838079)
[»] chr5 (1 HSPs)
chr5 (233-289)||(12846948-12847004)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 10 - 413
Target Start/End: Complemental strand, 2621431 - 2621028
Alignment:
10 tttggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatattagtaaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2621431 tttggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatattagtaaga 2621332  T
110 agctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2621331 agctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttat 2621232  T
210 cggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagaggttccaagtaatggttgttgtcgccgtcgtc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||    
2621231 cggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggatacgagggagagaggttcccagtaatggttgttgtcgccatcgtc 2621132  T
310 aactaacttgaagatacactcccaccactcctctggtaagaatgaacatgtttccgccattgtttttggaatattgaatgtcaatgattatgataatgat 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | ||||| ||||||    
2621131 aactaacttgaagatacactcccaccactcctctggtaagaatgaacatgtttccgccattgtttgtggaatattggatgtcaataactatgacaatgat 2621032  T
410 gatg 413  Q
    ||||    
2621031 gatg 2621028  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 308
Target Start/End: Complemental strand, 2367805 - 2367648
Alignment:
151 gagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggac 250  Q
    |||||||||||  || |||||||| | ||| ||||||  || ||||||||| ||||||||||| ||||  |||||||| || |||||||||||||||||     
2367805 gagggatgtgaggttggggaacctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttggtgatggag 2367706  T
251 aaaaactgtttggacacgagggagagaggttccaagtaatggttgttgtcgccgtcgt 308  Q
    | ||| |||||||| |||| ||| ||||||||||||||  |||||||||||| |||||    
2367705 agaaattgtttggagacgatggaaagaggttccaagtagcggttgttgtcgctgtcgt 2367648  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 2486229 - 2486364
Alignment:
143 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 242  Q
    ||||| ||| ||||||| | |||||||||||  |  ||||| ||| ||| ||||||||| ||||| |||||||||||||  ||||| || ||||||||||    
2486229 gtgatattgtgggatgtaacattagggaacccataaaagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttgg 2486328  T
243 tgatggacaaaaactgtttggacacgagggagagag 278  Q
    ||||||||| ||||||||| || |||||||||||||    
2486329 tgatggacagaaactgttttgagacgagggagagag 2486364  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 261
Target Start/End: Complemental strand, 5106428 - 5106333
Alignment:
166 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 261  Q
    ||||||||| | |||||||||| |||||||||||||||||| ||  | ||||||||  ||||| ||  ||||||||||||||||||||||||||||    
5106428 agggaaccttttgaagaggcgatgaatgaaagggatggtttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttt 5106333  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 5102224 - 5102106
Alignment:
143 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 242  Q
    ||||||||||| |||||||  ||||||||||| ||||| ||| ||||||||||||||||||||  ||| | ||||||||  ||||| || ||||  || |    
5102224 gtgatgttgagtgatgtgacgttagggaacctttcgaaaaggagaggaatgaaagggatggttcgatcagtgattgtgaccgagaatcgaagactattag 5102125  T
243 tgatggacaaaaactgttt 261  Q
    |||| ||||||||||||||    
5102124 tgatagacaaaaactgttt 5102106  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 2547466 - 2547587
Alignment:
155 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 254  Q
    |||||||| ||||||||||| | ||||| | |||||| | || ||||| | | |  |||||||||||  |||||||| ||||||||||||||||||| ||    
2547466 gatgtgatgttagggaacctttggaagaagtgaggaagggaaaggatgatatgactggagattgtgactgagaaccggagacggttggtgatggacagaa 2547565  T
255 actgtttggacacgagggagag 276  Q
    |||||||||| |||| ||||||    
2547566 actgtttggagacgatggagag 2547587  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 288
Target Start/End: Original strand, 12124770 - 12124891
Alignment:
167 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 266  Q
    |||||||| | |||||||||   || ||||||||| |||| ||| ||||||| |||||| ||  | ||||||||||||||||| | ||| |||||||| |    
12124770 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggaaaattggagacggttggtgatggagagaaattgtttggaga 12124869  T
267 cgagggagagaggttccaagta 288  Q
    | | ||||||||||||||||||    
12124870 caatggagagaggttccaagta 12124891  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 264
Target Start/End: Original strand, 2472035 - 2472135
Alignment:
164 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 263  Q
    ||||||||||| ||||||||| || ||| ||||||||| |||| |  | ||||||||| |||||| |  ||||| ||||||||||| |||||||||||||    
2472035 ttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcagagacgattggtgatggagaaaaactgtttgg 2472134  T
264 a 264  Q
    |    
2472135 a 2472135  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 278
Target Start/End: Original strand, 2491062 - 2491185
Alignment:
155 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 254  Q
    ||||| || ||||||||||| || ||||| |||  || ||||||||| |||  ||||||||||||||  || || || |||||||| |||||||||| ||    
2491062 gatgtaatgttagggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaa 2491161  T
255 actgtttggacacgagggagagag 278  Q
    ||||||| || ||||| |||||||    
2491162 actgttttgagacgagtgagagag 2491185  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 2519155 - 2519273
Alignment:
143 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 242  Q
    ||||||||||| ||||| |  || |||||||| || ||||| ||| ||| ||||||||| |||| ||| ||||||||||  ||| | || | ||||||||    
2519155 gtgatgttgagtgatgtaacgttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttgg 2519254  T
243 tgatggacaaaaactgttt 261  Q
    ||||||||| |||||||||    
2519255 tgatggacagaaactgttt 2519273  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 2382623 - 2382562
Alignment:
143 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggt 204  Q
    ||||| ||||||||||||| |||||||| |||   |||||||||||||||||||||||||||    
2382623 gtgatattgagggatgtgacattagggagccttcggaagaggcgaggaatgaaagggatggt 2382562  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 2525679 - 2525814
Alignment:
143 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 242  Q
    ||||| ||||| ||||  || ||||||||||| || ||||| |||  ||  |||||||| |||  || |||||||||||   |||| || |||| |||||    
2525679 gtgatattgagtgatgcaatgttagggaacctttcaaagagacgattaagaaaagggatagttgcattggagattgtgaccaagaatcgaagactgttgg 2525778  T
243 tgatggacaaaaactgtttggacacgagggagagag 278  Q
    ||||||||| ||||||||| || |||||||||||||    
2525779 tgatggacagaaactgttttgagacgagggagagag 2525814  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 308
Target Start/End: Complemental strand, 2373352 - 2373212
Alignment:
167 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 266  Q
    |||||||| | ||||||||||  || |||||| || ||||||||| | ||||  |||||||| || ||| | ||||||||||| | ||| |||||||| |    
2373352 gggaacctttggaagaggcgattaaggaaaggaattgttttatcg-acattgctatggagaatcggagatgattggtgatggagagaaattgtttggaaa 2373254  T
267 cgagggagagaggttccaagtaatggttgttgtcgccgtcgt 308  Q
    | | |||||||||||| |||||  || |||||| ||||||||    
2373253 caacggagagaggttcgaagtagcggctgttgttgccgtcgt 2373212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 257
Target Start/End: Original strand, 2477421 - 2477604
Alignment:
68 agcgatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattag 167  Q
    |||||| ||| ||||| ||  ||||||||||| |  ||||||||||| || |||||||||||| | ||||     |||||||| ||||||||||  ||||    
2477421 agcgatctgaggtctatagctaaagtggatatttgggtaagaagctcatcaaggtcactttctct-gaga-----gtgatgtttagggatgtgacgttag 2477514  T
168 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaact 257  Q
    ||||||| |  |||||  || ||| | |||||||||||| |||||| ||||| |  ||||| || |||| |||||| ||||||| |||||    
2477515 ggaacctttgaaagagaggatgaagggaagggatggtttgatcggaaattgtcacagagaatcgaagactgttggttatggacagaaact 2477604  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 2391136 - 2391036
Alignment:
149 ttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatgg 248  Q
    ||||||||||||| ||||| |||||  | |||||   |||||||||||||||||||||  | || |||| |||||||||| || |||  |||||||||||    
2391136 ttgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatgg 2391037  T
249 a 249  Q
    |    
2391036 a 2391036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 2467316 - 2467587
Alignment:
1 tttcgtctctttggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatata 100  Q
    |||| |||||||||||||||||||||||||||||| |||||   |  ||| |   ||| ||| ||| || ||||||| ||| | |||||||||||| ||     
2467316 tttcatctctttggagaaagctcgcaacccatctgcaggaaccgt--tatgggg-tggtagagagtgagggatttgaggtccaaagggaaagtggagatt 2467412  T
101 ttagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaaggga 200  Q
    || ||||||||  ||| |||||||||||||   ||||     |||||||  |  ||| ||||||| |||||||| || ||||| ||| |||  |||||||    
2467413 ttggtaagaagtgcgttgaggtcactttctaccgagaga---gtgatgtcaattgatctgatattggggaacctttcaaagagacgatgaagtaaaggga 2467509  T
201 tggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagag 278  Q
    | |||   ||||| || | || |||||| || |||| |||||| ||||||||||||||||| || |||| ||||||||    
2467510 ttgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagag 2467587  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 2486145 - 2486204
Alignment:
71 gatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttct 130  Q
    ||||||| ||| | |||||||||||| ||||  |||||||||||| ||||||||||||||    
2486145 gatttgaggtccaaagggaaagtggagatatgtgtaagaagctcgccgaggtcactttct 2486204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 5035544 - 5035679
Alignment:
143 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 242  Q
    ||||| ||||| ||||| |||||||||||||| || ||||| |||  || ||||||||| |||   || |||||| |||   |||| || ||||||||||    
5035544 gtgatattgagtgatgtaatattagggaacctttcaaagagacgactaaggaaagggattgttgcctcagagattttgaccaagaatcgaagacggttgg 5035643  T
243 tgatggacaaaaactgtttggacacgagggagagag 278  Q
    ||||||| | ||||||||| || |||| ||| ||||    
5035644 tgatggagagaaactgttttgaaacgaaggaaagag 5035679  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 1517071 - 1517029
Alignment:
233 agacggttggtgatggacaaaaactgtttggacacgagggaga 275  Q
    |||||||||||||||||||| || |||||||| ||||||||||    
1517071 agacggttggtgatggacaagaattgtttggaaacgagggaga 1517029  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 12126852 - 12126940
Alignment:
193 gaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagaggtt 281  Q
    |||||||||  ||| ||| |||| || |||||||||  | ||||||||||||||||| | ||| |||||||| || | |||||||||||    
12126852 gaaagggattttttcatctgagactgcgatggagaataggagacggttggtgatggagagaaattgtttggagacaatggagagaggtt 12126940  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 2576512 - 2576415
Alignment:
164 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 261  Q
    ||||||| ||| ||||||||||||  ||||||||||||||||  ||||| ||||||||  ||||| || ||||| ||||||||||| |||||||||||    
2576512 ttagggatcctttcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaactgttt 2576415  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 15838079 - 15837979
Alignment:
164 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 263  Q
    ||||||||||| | |||||||  ||||||||||||||| |||| |||   |||| ||| |||||| || ||||||||||||||||| | |||||||||||    
15838079 ttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttgg 15837980  T
264 a 264  Q
    |    
15837979 a 15837979  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 12846948 - 12847004
Alignment:
233 agacggttggtgatggacaaaaactgtttggacacgagggagagaggttccaagtaa 289  Q
    ||||||||||||||||| |  ||||| ||||| |||||||||||| |||||||||||    
12846948 agacggttggtgatggagaggaactgcttggaaacgagggagagatgttccaagtaa 12847004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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