View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19376_low_4 (Length: 395)
Name: NF19376_low_4
Description: NF19376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19376_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 47047551 - 47047919
Alignment:
| Q |
11 |
catcatcaattagaacaaggtagtaacaagaacaataataattctctgtttcgcagttatgtttctggaaaaagaacaacaaacttgttcagctggattg |
110 |
Q |
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| T |
47047551 |
catcatcaattagaacaaggtagtaacaagaacaataataattctctgtttcgcagttatgtttctggaaaaagaacaacaaacttgttcagctggattg |
47047650 |
T |
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| Q |
111 |
aaaatccatctatggctgctgatgctgttgaaaatggatggtcaagatttgctttcactagctataaaagttacatgccatcgccatcaaagaaggttac |
210 |
Q |
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| T |
47047651 |
aaaatccatctatggctgctgatgctgttgaaaatggatggtcaagatttgctttcactagctataaaagttacatgccatcgccatcaaagaaggttac |
47047750 |
T |
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| Q |
211 |
actgttaggatcatgtgcacctgtaggtgattatcgaagagaatcatctgaagctgagattagttgggaagtttcacgtggatcagatgagtttatgcag |
310 |
Q |
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| T |
47047751 |
actgttaggatcatgtgcacctgtaggtgattatcgaagagaatcatctgaagctgagattagttgggaagtttcacgtggatcagatgagtttatgcag |
47047850 |
T |
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| Q |
311 |
aaagttagattgaatcctggattaagaaaatctaatcaagttattcaaaataattctatggttacttct |
379 |
Q |
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| T |
47047851 |
aaagttagattgaatcctggattaagaaaatctaatcaagttattcaaaataattctatggttacttct |
47047919 |
T |
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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 16291702 - 16291603
Alignment:
| Q |
12 |
atcatcaattagaacaaggtagtaacaagaacaataataattctctgtttcgcagttatgtttctggaaaaagaacaacaaacttgttcagctggattga |
111 |
Q |
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| T |
16291702 |
atcatcaattagaacgaggtagtaacaataacaataat---tctctgttctgcagtaatgtttttggaaaaagaacaacaaatttgttcagctgggttga |
16291606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 5656330 - 5656251
Alignment:
| Q |
95 |
ttgttcagctggattgaaaatccatctatggctgctgatgctgttgaaaatggatggtcaagatttgctttcactagcta |
174 |
Q |
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| T |
5656330 |
ttgttcaactggaatgatcatccatatctagcttctgatgctatagaaaatggatggtcaagatttgctttcactagcta |
5656251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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