View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19376_low_5 (Length: 389)
Name: NF19376_low_5
Description: NF19376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19376_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 31214498 - 31214123
Alignment:
| Q |
1 |
tccaatggtggaaggaataggtccagaaaagtggttgccaaaaagtataaggtcagtcaaattggccaagttttggatcgaaggagggagtgatccagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31214498 |
tccaatggtggaaggaataggtccagaaaagtggttttgatgaaggataaggtcagtcaaattggccaagttttggatcgaaggagggactgatccagaa |
31214399 |
T |
|
| Q |
101 |
agtttgttgtcattaaggctgagcatggacaagtaagacaagttccacaaggatgctgggatttgtccagacaacattgtgttattagcaaggtaaagtt |
200 |
Q |
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| T |
31214398 |
aatttgttgccatcaagatagagtatggacaagtaagacaagttccacaaggatgctgggatttgtccagacaacattgtgttattagaaaggtaaagtt |
31214299 |
T |
|
| Q |
201 |
tacttaaactggtcatgttaccaattgaatctgggatggtaccagatagagtgttcccttgcaaatccattttaccaagttttgtcaacattccaatttc |
300 |
Q |
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||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31214298 |
cacttaaactagtcatgttaccaattgattttgggatggtaccagatagagtgttcctttgcaaatccattaaaccaagttttgtcaacattccaatttc |
31214199 |
T |
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| Q |
301 |
tcggggaatggaaccaatacggttacagtttgcaaaagatacatgcactaattggtttaatttaccaatagcaaga |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
31214198 |
tcggggaatggaaccaatacggttacagtttgcaaaagatacatgcactaattggtttaatttaacaatcgcaaga |
31214123 |
T |
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