View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19376_low_9 (Length: 282)
Name: NF19376_low_9
Description: NF19376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19376_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 32708810 - 32708561
Alignment:
| Q |
20 |
agggaaccataaaagaagaggagcttgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatt |
119 |
Q |
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| T |
32708810 |
agggaaccataaaagaagaggagcttgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatt |
32708711 |
T |
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| Q |
120 |
taccatcgatcgattgggagtttctgaagtgaattggaatgctcttgatcaatggaatgctcttgcttgtgagtctcaaatgtctgaatcactcggcgat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32708710 |
taccatcgatcgattgggagtttctgaagtgaattggaatgctcttgatcaatggaatgctcttgcttgtgagtctcaaatgtctgaatcacttggcgat |
32708611 |
T |
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| Q |
220 |
ggtgcatacaatgtgatgcagtgcatgagagccgtttctgaacctttgct |
269 |
Q |
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| T |
32708610 |
ggtgcatacaatgtcatgcagtgcatgagagccgtttctgaacctttgct |
32708561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 32627131 - 32627031
Alignment:
| Q |
20 |
agggaaccataaaagaagaggagcttgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatt |
119 |
Q |
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|||||| ||||||||||||| | || ||||||||||||| ||| ||| |||||||||||| |||||||||||||||||| | | ||||||||||| |
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| T |
32627131 |
agggaatcataaaagaagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcatt |
32627032 |
T |
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| Q |
120 |
t |
120 |
Q |
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| T |
32627031 |
t |
32627031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 231
Target Start/End: Complemental strand, 27736133 - 27735949
Alignment:
| Q |
47 |
atactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctga |
146 |
Q |
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| T |
27736133 |
atactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatcatttgtcatcaataaattggaggtttctga |
27736034 |
T |
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| Q |
147 |
agtgaattggaatgctcttgatcaatggaatgctcttgcttgtgagtctcaaatgtctgaatcactcggcgatggtgcatacaat |
231 |
Q |
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| T |
27736033 |
agttaattggaatgctcttgatgattgtaatgcctttgactttgaatctgaaatgtcagaatcactcagagatgatggatacaat |
27735949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 5810796 - 5810680
Alignment:
| Q |
51 |
tttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctgaagtg |
150 |
Q |
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||||||||||||| | || |||||||||||| || || | ||||||||||||| ||||||||||| ||||| |||||| | ||||||||||| |
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| T |
5810796 |
tttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcaccgaaggatcattctccatcagtcgattagaggtttctgaagta |
5810697 |
T |
|
| Q |
151 |
aattggaatgctcttga |
167 |
Q |
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| T |
5810696 |
aattggaatgctcttga |
5810680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 20117936 - 20118000
Alignment:
| Q |
72 |
tccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgg |
136 |
Q |
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|||||||||| | |||||||||||||||||||| | ||||| |||||| |||||||| ||||| |
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| T |
20117936 |
tccatctccaactgaagtgaaattggaagttctaactgaagggtcatttgtcatcgatcaattgg |
20118000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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