View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19377_high_9 (Length: 217)

Name: NF19377_high_9
Description: NF19377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19377_high_9
NF19377_high_9
[»] chr1 (8 HSPs)
chr1 (19-198)||(6521636-6521815)
chr1 (19-195)||(6506923-6507099)
chr1 (19-199)||(6517219-6517399)
chr1 (19-197)||(6512822-6513000)
chr1 (106-192)||(47778041-47778127)
chr1 (19-191)||(47760133-47760299)
chr1 (114-191)||(6523733-6523810)
chr1 (126-191)||(47781969-47782034)
[»] scaffold0341 (2 HSPs)
scaffold0341 (19-195)||(948-1124)
scaffold0341 (19-195)||(8601-8778)
[»] chr7 (1 HSPs)
chr7 (22-167)||(722161-722305)
[»] chr5 (3 HSPs)
chr5 (20-140)||(28856512-28856632)
chr5 (88-138)||(28831318-28831368)
chr5 (20-140)||(28861789-28861909)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 6521636 - 6521815
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521636 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 6521735  T
Q  119 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6521736 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctc 6521815  T

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Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 6507099 - 6506923
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  6507099 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 6507000  T
Q  119 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggt 195  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| ||||||||||    
T  6506999 aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggt 6506923  T

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Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 6517399 - 6517219
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||  |||||||||| |||||| ||| |||||||||||||  |||||||||||| |||||    
T  6517399 gacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtctccaaaattcaactgtgtttctaacacaacgttgtc 6517300  T
Q  119 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctct 199  Q
    ||||  ||||| |||||||||| |||||| | |||||   |||||||||||| ||||||| ||||||||||||||||||||    
T  6517299 aaaatagaaaacaagcaattggttggtacgatgatgatagatgcatgttgcgttactcaagccgttcaatatttggtctct 6517219  T

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Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 6513000 - 6512822
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| | || |||||| ||||  |||||||||||| |||||    
T  6513000 gacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaattcatctgtctttctaacacaactttgtc 6512901  T
Q  119 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtct 197  Q
    |||| |||||||| || ||||| |||||  | || ||   |||||||||||| |||||| ||||||||||||| |||||    
T  6512900 aaaatcgaaaagaggctattggttggtatgatgaagatacatgcatgttgcgttactcataccgttcaatattcggtct 6512822  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 47778041 - 47778127
Alignment:
Q  106 acacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatattt 192  Q
    ||||||| ||||| ||||  ||| ||||||||||| |||||| | |||||| ||||||||||||| |||||| ||||||||||||||    
T  47778041 acacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatattt 47778127  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 47760299 - 47760133
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    |||||||||||||| |||||||| |||||||||||||| |||| | | | ||| |  | ||| |||||  ||||||  |||||||| ||| ||| |||||    
T  47760299 gacaaagtaaacgccattggactctgtagaggagatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtc 47760200  T
Q  119 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 191  Q
     ||||| ||||||||||||||| ||||      ||||  | ||||||||||| ||||||||||| ||||||||    
T  47760199 caaaccaaaaagaagcaattggttggt------atgataactgcatgttgcgttactcaaaccgatcaatatt 47760133  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 6523733 - 6523810
Alignment:
Q  114 ttgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 191  Q
    ||||| ||||| ||||||||||||||| |||||  | |||||| ||||||||||||| || ||| ||||||| |||||    
T  6523733 ttgtccaaaccaaaaagaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttccatatt 6523810  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 47781969 - 47782034
Alignment:
Q  126 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 191  Q
    |||||||||||||||||||||| | |||||  |||||||||| || || ||| ||||||| |||||    
T  47781969 aaaagaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatatt 47782034  T

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Target: scaffold0341 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 1124 - 948
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  1124 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 1025  T
Q  119 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggt 195  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| ||||||||||    
T  1024 aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggt 948  T

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Target: scaffold0341; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 8778 - 8601
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  8778 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 8679  T
Q  119 aaaa-ccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggt 195  Q
    ||||  |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| ||||||||||    
T  8678 aaaatacgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggt 8601  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 722161 - 722305
Alignment:
Q  22 aaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaa 121  Q
    |||||||||| | |||||||||||||||||||||| || |||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||||   |||    
T  722161 aaagtaaacgtggttggactatgtagaggagatgttaagctcaatgattgtcaaa-ttgccacaaatattcaattgtccttctaacacaacatttataaa 722259  T
Q  122 accgaaaagaagcaattggatggtacaacgatgaagaatgcatgtt 167  Q
    ||||||||||||||||||||| |||| | |||||| ||||||||||    
T  722260 accgaaaagaagcaattggattgtacgatgatgaaaaatgcatgtt 722305  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 28856632 - 28856512
Alignment:
Q  20 acaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtca 119  Q
    |||||||| |||| || ||| |||| ||||||||||| || |  |||||||| |  | ||| || || |||||||  ||||||||||||||| ||||||     
T  28856632 acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtcc 28856533  T
Q  120 aaaccgaaaagaagcaattgg 140  Q
    ||||  |||||||||||||||    
T  28856532 aaacaaaaaagaagcaattgg 28856512  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 28831368 - 28831318
Alignment:
Q  88 aattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaatt 138  Q
    |||||||  ||||||||||||||| |||||| ||||| |||||||||||||    
T  28831368 aattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaatt 28831318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 28861909 - 28861789
Alignment:
Q  20 acaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtca 119  Q
    |||||||| |||| || ||| |||| ||||||||||| || |  |||||||| |  | ||| || || |||||||  ||||||||||||||| | ||||     
T  28861909 acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcc 28861810  T
Q  120 aaaccgaaaagaagcaattgg 140  Q
     |||| |||||||||||||||    
T  28861809 taaccaaaaagaagcaattgg 28861789  T

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