View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19377_low_3 (Length: 528)
Name: NF19377_low_3
Description: NF19377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19377_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 514
Target Start/End: Original strand, 49690434 - 49690923
Alignment:
| Q |
15 |
acttgtgtggtactcattttccaagtcaaccagcgtgtcaattggatttaaaggatatatttatatttatgcaatgaaattaacaagtgtggaacaaatt |
114 |
Q |
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| T |
49690434 |
acttgtgtggtactcattttccaagtcaactagcgtgtcaatttgcttcaaagaatatatttatgtcg-tgcaa----attaa-aagtgtggaacaaatt |
49690527 |
T |
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| Q |
115 |
gtttaacacacacagttgaatggctttagtttatgttttacattttaggttccttttgttctctcatttaattgtgttactgctacttgtcttaactagg |
214 |
Q |
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| T |
49690528 |
gtttaacacaa----ttgaatggctttagtttatgttttacattttaggttccttttgttctctcatttgactgtgttactgctacttgtcttaactagg |
49690623 |
T |
|
| Q |
215 |
aaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtcttgggtttcttaaatacccttttacaacagttgaattcccaagctgtg |
314 |
Q |
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| T |
49690624 |
aaaggaaatggacacagtggtgattgtccagactcatttggttgtggaaatcttgggttttttaaatacccttttacaacagttgaattcccaagctgtg |
49690723 |
T |
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| Q |
315 |
gtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattga |
414 |
Q |
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| T |
49690724 |
gtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaaccaaaagaggaaaactcttccaagttaaaaagattga |
49690823 |
T |
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| Q |
415 |
taatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagccatgttaatatt |
514 |
Q |
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| T |
49690824 |
taatcactggtccattggcaacactatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagctatgttaatatt |
49690923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 167 - 514
Target Start/End: Original strand, 49678949 - 49679288
Alignment:
| Q |
167 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtc |
266 |
Q |
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| T |
49678949 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaa--- |
49679045 |
T |
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| Q |
267 |
ttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagta |
366 |
Q |
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| T |
49679046 |
-----ttgattaaatacccttttacaacagttgaattcccaagctgtggtacattggcaattcaaggttgtgataatctcaacaaaactgctatgaagca |
49679140 |
T |
|
| Q |
367 |
tgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcacc |
466 |
Q |
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| T |
49679141 |
cgtccagttaaccaaaggaggaaaactctttcaagttacaaacattgataatcgcgggtccattggcaacactatttccattattgaccccaatatcacc |
49679240 |
T |
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| Q |
467 |
aagcttttggagaaaaatgcttgtgaggcattcagccatgttaatatt |
514 |
Q |
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| T |
49679241 |
aagcttttggagaagaatgcttgtgaggcattcagccatgttaatatt |
49679288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 167 - 495
Target Start/End: Original strand, 49686316 - 49686638
Alignment:
| Q |
167 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtc |
266 |
Q |
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| T |
49686316 |
cttttgttctctcatttgactgtgttactgctacttgtcttaactagtaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaaatc |
49686415 |
T |
|
| Q |
267 |
ttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagta |
366 |
Q |
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| T |
49686416 |
ttggattggttggctacccttttaccacagttgaattcccaaactgtggtgcattggcaattcaaggttgtgacgatctcaacaaaactgctacgaaaca |
49686515 |
T |
|
| Q |
367 |
tgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcacc |
466 |
Q |
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| T |
49686516 |
cgtccagtttaccaaaggaggaaaacactttcaagttacaaacattaaaaatgagcggcc------caacactatttccattgttgatctgaatttcacc |
49686609 |
T |
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| Q |
467 |
aagcttttggagaaaaatgcttgtgaggc |
495 |
Q |
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| T |
49686610 |
aagcttttgcagaaaaatgcttgcgaggc |
49686638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 49678771 - 49678820
Alignment:
| Q |
10 |
ataatacttgtgtggtactcattttccaagtcaaccagcgtgtcaattgg |
59 |
Q |
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|||| |||||||||||||||||||| ||||||||| | |||||||||||| |
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| T |
49678771 |
ataagacttgtgtggtactcattttacaagtcaactaacgtgtcaattgg |
49678820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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