View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19377_low_4 (Length: 400)
Name: NF19377_low_4
Description: NF19377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19377_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 20 - 386
Target Start/End: Original strand, 2088939 - 2089297
Alignment:
| Q |
20 |
ataagatcacatgttaaatgccaccaattcaactacatacaagaaactatactaaaaggtcaacacaacacaacacatataatatgtacaataattacct |
119 |
Q |
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| T |
2088939 |
ataagatcacatgttaaatgccaccaattcaactacatacaagaaactatactaaaagg-----ccaacacaccacatataatatgtacaataattacct |
2089033 |
T |
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| Q |
120 |
ttcgacatgttttcacttagtcaagaaccaccttttaacatggcacgaatagccgctgaataagtcttggattctataaaggaaaaataaataaattaag |
219 |
Q |
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| T |
2089034 |
ttcgacatgttttcacttagtcaagaaccaccttttagcatggcacgaatagccgctgaataagtcttggattctataaaggaaaa--aaaaaatataag |
2089131 |
T |
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| Q |
220 |
gtagttattttaaatcacaaatataagtaattaatcaaatgtatgtgtaattttgatggatccaaaagagtttttcaaaagcaaaaattgaaatccttga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
2089132 |
gtagttattttaaatcacaaatataagtaattaatcaaatgtatgtgtaattttgatggatccaaaagag--tttcaaaagcaaaatttgaaatccttga |
2089229 |
T |
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| Q |
320 |
tcaaatctattattaagattccaaaatcctaaatcaaatttaatcatgaattttt-tgctgataaaac |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
2089230 |
tcaaatctattattaagattccaaaatcctaaatcaaatttaatcatgagtttttgtgctgataaaac |
2089297 |
T |
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