View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19377_low_5 (Length: 368)

Name: NF19377_low_5
Description: NF19377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19377_low_5
NF19377_low_5
[»] chr1 (6 HSPs)
chr1 (15-355)||(40696774-40697121)
chr1 (157-191)||(49175509-49175543)
chr1 (155-184)||(33975480-33975509)
chr1 (147-191)||(29660689-29660733)
chr1 (157-193)||(48133094-48133130)
chr1 (93-193)||(49516948-49517046)
[»] chr5 (5 HSPs)
chr5 (104-189)||(18704139-18704223)
chr5 (146-193)||(22573484-22573531)
chr5 (157-191)||(39257541-39257575)
chr5 (157-190)||(26516180-26516213)
chr5 (105-193)||(20982240-20982326)
[»] chr6 (5 HSPs)
chr6 (153-192)||(31828912-31828951)
chr6 (157-191)||(3181226-3181260)
chr6 (154-184)||(32917111-32917141)
chr6 (157-197)||(2034597-2034637)
chr6 (157-189)||(9041572-9041604)
[»] chr3 (4 HSPs)
chr3 (137-192)||(23785133-23785187)
chr3 (159-193)||(49772827-49772861)
chr3 (146-191)||(52324021-52324066)
chr3 (157-193)||(37308220-37308256)
[»] chr2 (2 HSPs)
chr2 (154-193)||(34055284-34055323)
chr2 (51-96)||(14299586-14299631)
[»] chr8 (3 HSPs)
chr8 (158-191)||(43208289-43208322)
chr8 (137-193)||(2364609-2364664)
chr8 (157-189)||(7008512-7008544)
[»] chr7 (1 HSPs)
chr7 (157-189)||(1083876-1083908)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 355
Target Start/End: Complemental strand, 40697121 - 40696774
Alignment:
Q  15 tatttggaatgacttgtttaaatttatacactgacataagcacttgcgggactgtattgaagggtttatggaaacaacttattttatctttttgttataa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40697121 tatttggaatgacttgtttaaatttatacactgacataagcacttgcgggactgtatcgaagggtttatggaaacaacttattttatctttttgttataa 40697022  T
Q  115 aagtaacttatacaaaaaggacttatatgattaaacaattac---gctataagcgcttaattaagttgtttatacaaacaggcctagtatactaaaaaag 211  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40697021 aagtaacttatacaaaaaggacttatatgattaaacaattactccgctataagcgcttaattaagttgtttatacaaacgggcctagtatactaaaaaag 40696922  T
Q  212 aagaggttctccggtatcctatttctgtttgtttatctaatgtcattatattaagatgttagcaatagcaatgcctctccatagttatgaacaattaatc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40696921 aagaggttctccggtatcctatttctgtttgtttatctaatgtcattatattaagatgttagcaatagcaatgcctctccatagttatgaacaattaatc 40696822  T
Q  312 aaatca----tatagaaaattacaaatattcacatcatggttctattt 355  Q
    ||||||    ||||||||||||||||||||||||||||||||||||||    
T  40696821 aaatcatatatatagaaaattacaaatattcacatcatggttctattt 40696774  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 49175543 - 49175509
Alignment:
Q  157 gctataagcgcttaattaagttgtttatacaaaca 191  Q
    ||||||| |||||||||||||||||||||||||||    
T  49175543 gctataatcgcttaattaagttgtttatacaaaca 49175509  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 184
Target Start/End: Complemental strand, 33975509 - 33975480
Alignment:
Q  155 acgctataagcgcttaattaagttgtttat 184  Q
    ||||||||||||||||||||||||||||||    
T  33975509 acgctataagcgcttaattaagttgtttat 33975480  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 29660733 - 29660689
Alignment:
Q  147 aaacaattacgctataagcgcttaattaagttgtttatacaaaca 191  Q
    ||||| ||||||||||||||||||||||| |||| ||| ||||||    
T  29660733 aaacacttacgctataagcgcttaattaatttgtctatccaaaca 29660689  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 48133094 - 48133130
Alignment:
Q  157 gctataagcgcttaattaagttgtttatacaaacagg 193  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  48133094 gctataagcgcttaattaagttgtctatccaaacagg 48133130  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 49517046 - 49516948
Alignment:
Q  93 ttattttatctttttgttataaaagtaacttatacaaaaaggacttatatgattaaacaattacgctataagcgcttaattaagttgtttatacaaacag 192  Q
    |||||||||||||| |||||| || ||||||||||| |||  | ||||||||| ||||  ||| | | ||||| ||||||||||||||| || |||||||    
T  49517046 ttattttatctttt-gttatagaaataacttatacacaaacaatttatatgat-aaacgcttatgttttaagcacttaattaagttgttcattcaaacag 49516949  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 18704139 - 18704223
Alignment:
Q  104 ttttgttataaaagtaacttatacaaaaaggacttatatgattaaacaattacgctataagcgcttaattaagttgtttatacaaa 189  Q
    |||||||||| || ||||||||||| || | |||||||||||| |||| ||| |||| ||| ||||||||||||||||||| ||||    
T  18704139 ttttgttatagaaataacttatacataa-gaacttatatgatttaacacttatgctacaagagcttaattaagttgtttatccaaa 18704223  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 22573531 - 22573484
Alignment:
Q  146 taaacaattacgctataagcgcttaattaagttgtttatacaaacagg 193  Q
    |||||| ||| ||||||||||||||||||||||||| ||| |||||||    
T  22573531 taaacatttatgctataagcgcttaattaagttgttaatagaaacagg 22573484  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 39257541 - 39257575
Alignment:
Q  157 gctataagcgcttaattaagttgtttatacaaaca 191  Q
    |||||||||||||||||||||||||||| ||||||    
T  39257541 gctataagcgcttaattaagttgtttatccaaaca 39257575  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 26516213 - 26516180
Alignment:
Q  157 gctataagcgcttaattaagttgtttatacaaac 190  Q
    |||||||||||||||||||||||||||| |||||    
T  26516213 gctataagcgcttaattaagttgtttatccaaac 26516180  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 20982240 - 20982326
Alignment:
Q  105 tttgttataaaagtaacttatacaaaaaggacttatatgattaaacaattacgctataagcgcttaattaagttgtttatacaaacagg 193  Q
    ||||||||| || || |||||||| || | ||||||||||| || || ||| ||||||||| |||||| ||||||||||| ||||||||    
T  20982240 tttgttatagaaatagcttatacataa-gcacttatatgat-aagcacttatgctataagcacttaatgaagttgtttatccaaacagg 20982326  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 31828951 - 31828912
Alignment:
Q  153 ttacgctataagcgcttaattaagttgtttatacaaacag 192  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  31828951 ttacgctataagcgcttaattaagttgtttatagaaacag 31828912  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 3181226 - 3181260
Alignment:
Q  157 gctataagcgcttaattaagttgtttatacaaaca 191  Q
    |||||||||||||||||||||||||||| ||||||    
T  3181226 gctataagcgcttaattaagttgtttattcaaaca 3181260  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 184
Target Start/End: Complemental strand, 32917141 - 32917111
Alignment:
Q  154 tacgctataagcgcttaattaagttgtttat 184  Q
    |||||||||||||||||||||||||||||||    
T  32917141 tacgctataagcgcttaattaagttgtttat 32917111  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 2034597 - 2034637
Alignment:
Q  157 gctataagcgcttaattaagttgtttatacaaacaggccta 197  Q
    |||||||||||||||| || |||||||| ||||||||||||    
T  2034597 gctataagcgcttaatgaaattgtttatccaaacaggccta 2034637  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 9041572 - 9041604
Alignment:
Q  157 gctataagcgcttaattaagttgtttatacaaa 189  Q
    |||||||||||||||||||||||||||| ||||    
T  9041572 gctataagcgcttaattaagttgtttatccaaa 9041604  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 23785187 - 23785133
Alignment:
Q  137 ttatatgattaaacaattacgctataagcgcttaattaagttgtttatacaaacag 192  Q
    ||||||||| ||||| ||| ||||||||| |||||||||||||||||| |||||||    
T  23785187 ttatatgat-aaacatttatgctataagcacttaattaagttgtttatgcaaacag 23785133  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 49772827 - 49772861
Alignment:
Q  159 tataagcgcttaattaagttgtttatacaaacagg 193  Q
    |||||||||||||||||||||||||| ||||||||    
T  49772827 tataagcgcttaattaagttgtttattcaaacagg 49772861  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 52324021 - 52324066
Alignment:
Q  146 taaacaattacgctataagcgcttaattaagttgtttatacaaaca 191  Q
    |||||| ||| ||||||||| |||||||||||| ||||||||||||    
T  52324021 taaacacttatgctataagcacttaattaagttatttatacaaaca 52324066  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 37308220 - 37308256
Alignment:
Q  157 gctataagcgcttaattaagttgtttatacaaacagg 193  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  37308220 gctataagcacttaattaagttgtttatccaaacagg 37308256  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 34055284 - 34055323
Alignment:
Q  154 tacgctataagcgcttaattaagttgtttatacaaacagg 193  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  34055284 tacgctataagcacttaattaagttgtttttacaaacagg 34055323  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 14299586 - 14299631
Alignment:
Q  51 taagcacttgcgggactgtattgaagggtttatggaaacaacttat 96  Q
    |||||||||| |||||||| | |||| |||||||||||||||||||    
T  14299586 taagcacttgagggactgtttggaagagtttatggaaacaacttat 14299631  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 43208289 - 43208322
Alignment:
Q  158 ctataagcgcttaattaagttgtttatacaaaca 191  Q
    |||||||| |||||||||||||||||||||||||    
T  43208289 ctataagcacttaattaagttgtttatacaaaca 43208322  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 2364609 - 2364664
Alignment:
Q  137 ttatatgattaaacaattacgctataagcgcttaattaagttgtttatacaaacagg 193  Q
    ||||||||| ||||| ||| ||||||||||||||| || ||||||||| ||||||||    
T  2364609 ttatatgat-aaacacttatgctataagcgcttaactatgttgtttatccaaacagg 2364664  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 7008544 - 7008512
Alignment:
Q  157 gctataagcgcttaattaagttgtttatacaaa 189  Q
    |||||||||||||||||||||||||||| ||||    
T  7008544 gctataagcgcttaattaagttgtttatccaaa 7008512  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 1083876 - 1083908
Alignment:
Q  157 gctataagcgcttaattaagttgtttatacaaa 189  Q
    |||||||||||||||||||||||||||| ||||    
T  1083876 gctataagcgcttaattaagttgtttattcaaa 1083908  T

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