View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19377_low_6 (Length: 320)
Name: NF19377_low_6
Description: NF19377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19377_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 16921504 - 16921208
Alignment:
| Q |
19 |
atgcaatcatcttcaaatacagaagggaatgaagcactcataagcggcgctgccgaagaaataggatcagtttgatattgtggtagccctttcaaaccag |
118 |
Q |
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| T |
16921504 |
atgcaatcatcttcaaatacagaagggaatgaagcactcataagcggcgctgccgaagaaataggatcagtttgatattgtggtagccctttcaaaccag |
16921405 |
T |
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| Q |
119 |
aaagatgatgagtttgtgttgaagagaaatcaaattgttgttcttgatgagttgttaatggaagaagcggcggaacgagaaaagattgtgatgatgtgaa |
218 |
Q |
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| T |
16921404 |
aaagatgatgagtttgtgttgaagagaaatcaaattgttgttcttgatgagttgttaatggaagaagcggcggaacgagaaaagattgtgatgatgtgaa |
16921305 |
T |
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| Q |
219 |
atctatagaagctgaaatgtcattgtcaagatcttcttgtgaatcaaagata-atg-gaaaggttgttattattattggtatttgttgtgatgatgt |
313 |
Q |
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| T |
16921304 |
atctatagaagctgaaatgtcattgtcaagatcttcttgtgaatcaaagatatatgtgaaaggttgttattattattggtatttgttgtgttgatgt |
16921208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 32553967 - 32553895
Alignment:
| Q |
199 |
aaagattgtgatgatgtgaaatctatagaagctgaaatgtcattgtcaagatcttcttgtgaatcaaagataa |
271 |
Q |
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| T |
32553967 |
aaagatggtgatagtgagaaatctattgaggcagaaatgtcattgtcaatttcttcttgtgaatcaaagataa |
32553895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 2656424 - 2656388
Alignment:
| Q |
19 |
atgcaatcatcttcaaatacagaagggaatgaagcac |
55 |
Q |
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| T |
2656424 |
atgcaataatcttcaaatacagaagggaataaagcac |
2656388 |
T |
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