View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19377_low_8 (Length: 237)
Name: NF19377_low_8
Description: NF19377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19377_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1968828 - 1968607
Alignment:
| Q |
1 |
agccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttat |
100 |
Q |
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| T |
1968828 |
agccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttat |
1968729 |
T |
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| Q |
101 |
aggtcccatctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgat |
200 |
Q |
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| T |
1968728 |
aggtcccatctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgat |
1968629 |
T |
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| Q |
201 |
ctatcttgagctacgctcaaga |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
1968628 |
ctatcttgagctacgctcaaga |
1968607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2008187 - 2008408
Alignment:
| Q |
1 |
agccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttat |
100 |
Q |
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||||||||||||||||||| || |||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
2008187 |
agccattagcatcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttag |
2008286 |
T |
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| Q |
101 |
aggtcccatctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgat |
200 |
Q |
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||| |||||||| | ||| |||||||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||| |
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| T |
2008287 |
aggacccatctctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgat |
2008386 |
T |
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| Q |
201 |
ctatcttgagctacgctcaaga |
222 |
Q |
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||||||||||||| |||||||| |
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| T |
2008387 |
ctatcttgagctatgctcaaga |
2008408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 45 - 210
Target Start/End: Original strand, 2004851 - 2005016
Alignment:
| Q |
45 |
ggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatctccaattccaggaagctattaacaaaaacaccat |
144 |
Q |
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||||||||||||||||| |||||||| |||||||| || ||||||||| |||||||||| |||||||||| ||| |||||||||||||||| |||||||| |
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| T |
2004851 |
ggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggacccatctccatttctaggaagctattaacaagaacaccat |
2004950 |
T |
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| Q |
145 |
cagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctatcttgag |
210 |
Q |
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| T |
2004951 |
cagcaaaacttaaaagtttaagaagtgcgaggaattgtttgtaagcttgacttgacctatcttgag |
2005016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 2011804 - 2012023
Alignment:
| Q |
3 |
ccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttatag |
102 |
Q |
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||||||||||||||| | |||| |||| |||| ||||| || |||||||||||||| || | ||||||| ||||||| |||||| ||| | || |||||| |
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| T |
2011804 |
ccattagcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttatag |
2011903 |
T |
|
| Q |
103 |
gtcccatctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatct |
202 |
Q |
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||||||| |||| ||| | |||||||||||||| |||||||||||||||||||||| ||||| | || | ||||||| ||||||| ||||||||||||| |
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| T |
2011904 |
gtcccatttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatct |
2012003 |
T |
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| Q |
203 |
atcttgagctacgctcaaga |
222 |
Q |
| |
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||||||| ||| | |||||| |
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| T |
2012004 |
atcttgaactatggtcaaga |
2012023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 1964848 - 1964692
Alignment:
| Q |
45 |
ggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatctccaattccaggaagctattaacaaaaacaccat |
144 |
Q |
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||||||||||||||||| | ||||||| ||||||| |||||| || | | ||||||||||||| |||| ||| | |||||||||||||| |||||||| |
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| T |
1964848 |
ggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtcccatttccatttctaagaagctattaacaagaacaccat |
1964749 |
T |
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| Q |
145 |
cagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatc |
201 |
Q |
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|||||||||||||| ||||| | || | ||||||||||||||| |||||||||||| |
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| T |
1964748 |
cagcaaaacttaaacttttaacatgttgaaggaagtgtttgtaatcttgacttgatc |
1964692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 1963224 - 1963083
Alignment:
| Q |
5 |
attagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttataggt |
104 |
Q |
| |
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||||||||||||||| || ||||| |||||||||||| |||||||||| |||||| || |||| |||||||| || ||| ||||| | |||||| |
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| T |
1963224 |
attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctatagga |
1963125 |
T |
|
| Q |
105 |
cccatctccaattccaggaagctattaacaaaaacaccatca |
146 |
Q |
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||| | || | ||||||||||||||||| || |||||||||| |
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|
| T |
1963124 |
cccttttcaatttccaggaagctattaataagaacaccatca |
1963083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 2433113 - 2432965
Alignment:
| Q |
5 |
attagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttataggt |
104 |
Q |
| |
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|||||||||||| | ||||||||| ||| ||||| || ||||||||||||||||| |||| || |||||||| || ||| ||| | | ||||||| |
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| T |
2433113 |
attagcatcatcgtcagaacttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttccttcatctgtcagtgcttttatagga |
2433014 |
T |
|
| Q |
105 |
cccatctccaattccaggaagctattaacaaaaacaccatcagcaaaac |
153 |
Q |
| |
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||| | |||| ||| | |||||||||||||| |||||||||| |||||| |
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| T |
2433013 |
cccctttccatttctaagaagctattaacaagaacaccatcaacaaaac |
2432965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 2015205 - 2015279
Alignment:
| Q |
5 |
attagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttcc |
79 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||| |||||||||| |||||| || |||| |||||||| |
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|
| T |
2015205 |
attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttcc |
2015279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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