View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19378_low_2 (Length: 453)
Name: NF19378_low_2
Description: NF19378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19378_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 14438376 - 14438183
Alignment:
| Q |
17 |
accacgtataagtagggggctataaaatcagcaaagggaaatcatgaaaaagataaacttgggggattaaaattgcataaaataaactatgaggccaaaa |
116 |
Q |
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| T |
14438376 |
accacgtataagtagggggctttaaaatcagaaaagggaaatcatgaaaaagataaacttgggggattaaaattgcacaaaataaactatggggctaaaa |
14438277 |
T |
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| Q |
117 |
ttacacatttatgaaagttgaatgctaaaattgcatttaagcctaatatttactcgattgaacttcatgctatgctaaagaaagatttatttgt |
210 |
Q |
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| T |
14438276 |
ttacacatttataaaagttgaaggctaaaactgcatttaagcttaatatttactcgattgaacttcatgctatgctaaagaaagatttatttgt |
14438183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 14438149 - 14438102
Alignment:
| Q |
313 |
gtaagaaacccctatgtgaccattgtttcagtaaaacatggttggtct |
360 |
Q |
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| T |
14438149 |
gtaagaaacccctatgtgaccattgtttctgtaaaacatggttggtct |
14438102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 14438058 - 14438013
Alignment:
| Q |
360 |
tttcagtcatcttctatttttatattacccacttgagaaatttattt |
406 |
Q |
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| T |
14438058 |
tttcagtcatcttctatttttata-tacccacttgagaaatttattt |
14438013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 24428795 - 24428721
Alignment:
| Q |
63 |
aaaaagataaacttgggggattaaaattgcataaaataaactatga-ggccaaaattacacatttatgaaagttg |
136 |
Q |
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| T |
24428795 |
aaaaggataaacttaggagattaaaattgcataaaataaattaggagggccaaaattgcacatatataaaagttg |
24428721 |
T |
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