View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19378_low_3 (Length: 434)

Name: NF19378_low_3
Description: NF19378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19378_low_3
NF19378_low_3
[»] chr5 (4 HSPs)
chr5 (16-418)||(15474381-15474783)
chr5 (195-418)||(15467009-15467232)
chr5 (79-192)||(20269469-20269583)
chr5 (80-187)||(22398073-22398181)
[»] chr4 (1 HSPs)
chr4 (56-189)||(38562130-38562264)
[»] chr1 (4 HSPs)
chr1 (132-196)||(1609959-1610023)
chr1 (132-197)||(24419614-24419679)
chr1 (132-180)||(49166689-49166737)
chr1 (162-196)||(20814858-20814892)
[»] chr7 (1 HSPs)
chr7 (119-196)||(2635665-2635742)
[»] chr6 (2 HSPs)
chr6 (132-186)||(5069945-5069999)
chr6 (132-184)||(24252962-24253014)
[»] chr3 (1 HSPs)
chr3 (165-199)||(50561050-50561084)


Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 15474381 - 15474783
Alignment:
Q  16 attaaccaaatatcaaatattttagtcatggatggaaaaccggtcacatttataagnnnnnnncaactttttagatacattgaatagttatttatatgat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  15474381 attaaccaaatatcaaatattttagtcatggatggaaaaccggtcacatttataagaaaaaaataactttttagatacattgaatagttatttatatgat 15474480  T
Q  116 ctgtaaatataaccacatacaataattattcaatgttactacaaacttgttttttgcttataaatatgatcggaaagagtaataaaatgctaagaatttg 215  Q
    ||||||||||||||  |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15474481 ctgtaaatataacccgatacgataattattcaatgtttctacaaacttgttttttgcttataaatatgatcggaaagagtaataaaatgctaagaatttg 15474580  T
Q  216 tacctctgcttctaaagcttcaaatgtattgacaaacatccaatcagcttgatttaaattagagaattgattcaacttcatagccatataagcaggataa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15474581 tacctctgcttctaaagcttcaaatgtattgacaaacatccaatcagcttgatttaaattagagaattgattcaacttcatagccatataagcaggataa 15474680  T
Q  316 ctttccggaaaccttataaaacttggaagatctctagaattcaatggaggaagaccaggtacaatcaaaggcaattcatctacaggagtttcaatcaaac 415  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15474681 ctttcaggaaaccttataaaacttggaagatctctagaattcaatggaggaagaccaggtacaatcaaaggcaattcatctacaggagtttcaatcaaac 15474780  T
Q  416 cat 418  Q
    |||    
T  15474781 cat 15474783  T

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Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 195 - 418
Target Start/End: Original strand, 15467009 - 15467232
Alignment:
Q  195 taataaaatgctaagaatttgtacctctgcttctaaagcttcaaatgtattgacaaacatccaatcagcttgatttaaattagagaattgattcaacttc 294  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||| |||| |||    
T  15467009 taataaaatgctaagaatttgtacctctccttctaaagcttcaaatgtattgacaaacatccaatcagcttgatccaaatttgagaattgactcaatttc 15467108  T
Q  295 atagccatataagcaggataactttccggaaaccttataaaacttggaagatctctagaattcaatggaggaagaccaggtacaatcaaaggcaattcat 394  Q
    || |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  15467109 attgccatataagcagggtaactttcaggaaaccttataaaacttggaagatctctagaattcaatggaggaagatcaggtacaaccaaaggcaattcat 15467208  T
Q  395 ctacaggagtttcaatcaaaccat 418  Q
    | |||||| |||||||||||||||    
T  15467209 caacaggaatttcaatcaaaccat 15467232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 20269469 - 20269583
Alignment:
Q  79 caactttttagatacattgaatagtt-atttatatgatctgtaaatataaccacatacaataattattcaatgttactacaaacttgttttttgcttata 177  Q
    |||||||||||||| |||||||| || || ||| ||| ||  |||||| || | ||||| ||||||||||||||  ||| ||| |||||||||| |||||    
T  20269469 caactttttagatatattgaataattgatgtatctgacctacaaatatgacgaaatacattaattattcaatgtatctaaaaaattgttttttgtttata 20269568  T
Q  178 aatatgatcggaaag 192  Q
    ||| |||||||||||    
T  20269569 aatgtgatcggaaag 20269583  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 22398073 - 22398181
Alignment:
Q  80 aactttttagatacattgaatagttatt-tatatgatctgtaaatataaccacatacaataattattcaatgttactacaaacttgttttttgcttataa 178  Q
    ||||||||||||  |||||||| ||||| |||||  ||| ||||||| |||| ||||| |||||||||||||   ||| ||| |||| ||||  ||||||    
T  22398073 aactttttagatttattgaataattattgtatatagtctataaatatgaccaaatacattaattattcaatgaatctaaaaagttgtattttatttataa 22398172  T
Q  179 atatgatcg 187  Q
    |||||||||    
T  22398173 atatgatcg 22398181  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 38562130 - 38562264
Alignment:
Q  56 cggtcacatttataagnnnnnnncaactttttagatacattgaatagttatt-tatatgatctgtaaatataaccacatacaataattattcaatgttac 154  Q
    ||||||||||||||||       |||||| |||||||||||||||| ||| | ||||||  || ||||| | |||  ||||| ||||||||||||||  |    
T  38562130 cggtcacatttataagcaaaaaacaacttgttagatacattgaataattaatgtatatgtcctataaatgtgaccggatacattaattattcaatgtatc 38562229  T
Q  155 tacaaacttgttttttgcttataaatatgatcgga 189  Q
    || ||| ||||||||||||||||||| ||| ||||    
T  38562230 taaaaaattgttttttgcttataaatgtgaccgga 38562264  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 1610023 - 1609959
Alignment:
Q  132 atacaataattattcaatgttactacaaacttgttttttgcttataaatatgatcggaaagagta 196  Q
    ||||| ||||||||||||||  ||| ||| ||||||||||||||||||| |||||||| ||||||    
T  1610023 atacattaattattcaatgtatctaaaaagttgttttttgcttataaatgtgatcggatagagta 1609959  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 24419614 - 24419679
Alignment:
Q  132 atacaataattattcaatgttactacaaacttgttttttgcttataaatatgatcggaaagagtaa 197  Q
    ||||| ||||||||||||||  ||| ||| ||||||||||||||||||| ||| ||||| ||||||    
T  24419614 atacattaattattcaatgtacctaaaaagttgttttttgcttataaatgtgaccggaaggagtaa 24419679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 49166689 - 49166737
Alignment:
Q  132 atacaataattattcaatgttactacaaacttgttttttgcttataaat 180  Q
    ||||| |||||||||||||| |||| ||| |||||||||||||||||||    
T  49166689 atacattaattattcaatgtaactaaaaagttgttttttgcttataaat 49166737  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 20814858 - 20814892
Alignment:
Q  162 ttgttttttgcttataaatatgatcggaaagagta 196  Q
    ||||||||||||||||||||||||||||| |||||    
T  20814858 ttgttttttgcttataaatatgatcggaaggagta 20814892  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 2635665 - 2635742
Alignment:
Q  119 taaatataaccacatacaataattattcaatgttactacaaacttgttttttgcttataaatatgatcggaaagagta 196  Q
    ||||||| |||||||||| || |||||||||||   || ||| ||||||||| |||||||||||||||| || |||||    
T  2635665 taaatatgaccacatacattagttattcaatgtatttaaaaaattgttttttacttataaatatgatcgaaatgagta 2635742  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 5069999 - 5069945
Alignment:
Q  132 atacaataattattcaatgttactacaaacttgttttttgcttataaatatgatc 186  Q
    ||||| ||||||||||||||  ||| ||| ||||||||||||||||||| |||||    
T  5069999 atacattaattattcaatgtatctaaaaagttgttttttgcttataaatgtgatc 5069945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 24252962 - 24253014
Alignment:
Q  132 atacaataattattcaatgttactacaaacttgttttttgcttataaatatga 184  Q
    ||||| ||||||||||||||  ||| ||| || ||||||||||||||||||||    
T  24252962 atacattaattattcaatgtacctaaaaagttattttttgcttataaatatga 24253014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 50561084 - 50561050
Alignment:
Q  165 ttttttgcttataaatatgatcggaaagagtaata 199  Q
    ||||||||||||||||||||||||| |||||||||    
T  50561084 ttttttgcttataaatatgatcggagagagtaata 50561050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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