View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19378_low_4 (Length: 378)
Name: NF19378_low_4
Description: NF19378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19378_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 25277164 - 25277516
Alignment:
| Q |
11 |
cagagatgtcagactctgtaggattttctcctttttcaacattttcataaacagatatttgcataagagcagttgcacaatattgatagtttccatttag |
110 |
Q |
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| T |
25277164 |
cagagatatcagactcagtagaattttttcctttttcaacattttcataaacagatatttgcataggagcagctgcacaatattgatagtttccatttag |
25277263 |
T |
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| Q |
111 |
gaacatattattgtcattgttcacaccatctgaaatgttaaccctgctagaagaagtgttaccatttcttttatgccgacttttattatctcgaatatac |
210 |
Q |
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| T |
25277264 |
gaacatattattgtcattgttcacaccatatgaaatgttaaccctgctagaagaagtgttaccatttctttttttccgacttttattatctcgaatatac |
25277363 |
T |
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| Q |
211 |
aatgactacttgacaaagggaaaggtaggtgtaagcatcttatcaacgctattgactttggttggttgtgttgtagccatggaaatatgttcaagtgttg |
310 |
Q |
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| T |
25277364 |
aatggctacttgacaaagggaaaggtaggtgtaagcatcttatcaacgctattgagtttggttggttgtgttgtagccatggaaatatgttcaggtgtta |
25277463 |
T |
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| Q |
311 |
aaatagttttaacaatgtttgaagtgaaagtgttttcatttgaaagttgttta |
363 |
Q |
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| T |
25277464 |
aaatagttttaacaatgtttgaagtgaaagtgtttccatttgaaagttgttta |
25277516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 161 - 297
Target Start/End: Complemental strand, 25262230 - 25262094
Alignment:
| Q |
161 |
aagaagtgttaccatttcttttatgccgacttttattatctcgaatatacaatgactacttgacaaagggaaaggtaggtgtaagcatcttatcaacgct |
260 |
Q |
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| T |
25262230 |
aagaattgttaccatttcttttttgctgactcttattatcttgaataaataatgatttattgataaagggaaaggtaggagtaaacaacttatcaacact |
25262131 |
T |
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| Q |
261 |
attgactttggttggttgtgttgtagccatggaaata |
297 |
Q |
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| T |
25262130 |
attgagtttggttgattgtgttgtagctatgggaata |
25262094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 361
Target Start/End: Original strand, 25300263 - 25300365
Alignment:
| Q |
258 |
gctattgactttggttggttgtgttgtagccatggaaatatgttcaagtgttgaaatagttttaacaatgtttgaagtgaaagtgttttcatttgaaagt |
357 |
Q |
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|||||||| || ||||||||| ||| ||||| |||||||| ||| | |||| |||| |||||||||||||||||| ||||| ||| ||||||||||| |
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| T |
25300263 |
gctattgagttgggttggttg-gttatagccttggaaataagttgagaggttggaatatctttaacaatgtttgaagttaaagtatttccatttgaaagt |
25300361 |
T |
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| Q |
358 |
tgtt |
361 |
Q |
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|||| |
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| T |
25300362 |
tgtt |
25300365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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