View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19379_high_12 (Length: 518)

Name: NF19379_high_12
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19379_high_12
NF19379_high_12
[»] chr5 (7 HSPs)
chr5 (153-502)||(28398464-28398808)
chr5 (153-498)||(28390634-28390979)
chr5 (30-180)||(28398248-28398397)
chr5 (32-175)||(28390398-28390540)
chr5 (143-180)||(30485686-30485723)
chr5 (242-278)||(11079726-11079762)
chr5 (142-178)||(28398549-28398585)
[»] chr3 (6 HSPs)
chr3 (129-180)||(25735577-25735628)
chr3 (236-278)||(49906845-49906887)
chr3 (140-173)||(25735471-25735504)
chr3 (138-174)||(39721981-39722017)
chr3 (246-278)||(39722098-39722130)
chr3 (141-181)||(49906850-49906890)
[»] chr4 (7 HSPs)
chr4 (236-278)||(24572075-24572117)
chr4 (236-278)||(35765451-35765493)
chr4 (132-180)||(32742991-32743039)
chr4 (141-181)||(35765448-35765488)
chr4 (142-181)||(24572072-24572111)
chr4 (242-275)||(13216735-13216768)
chr4 (242-278)||(53840257-53840293)
[»] chr8 (7 HSPs)
chr8 (242-278)||(72804-72840)
chr8 (132-175)||(37044081-37044124)
chr8 (140-181)||(72801-72842)
chr8 (242-275)||(14976838-14976871)
chr8 (30-86)||(43488063-43488118)
chr8 (242-275)||(37044091-37044124)
chr8 (140-173)||(37044154-37044187)
[»] chr1 (4 HSPs)
chr1 (118-183)||(13694133-13694198)
chr1 (246-278)||(13694161-13694193)
chr1 (242-282)||(25089836-25089876)
chr1 (142-178)||(25089836-25089872)
[»] scaffold0018 (2 HSPs)
scaffold0018 (253-295)||(147234-147276)
scaffold0018 (142-182)||(147559-147599)
[»] chr6 (5 HSPs)
chr6 (132-181)||(29064877-29064926)
chr6 (132-181)||(29119731-29119780)
chr6 (138-174)||(6261239-6261275)
chr6 (242-278)||(29064880-29064916)
chr6 (242-278)||(29119734-29119770)
[»] chr7 (1 HSPs)
chr7 (250-278)||(5467643-5467671)


Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 153 - 502
Target Start/End: Original strand, 28398464 - 28398808
Alignment:
Q  153 tatctatatttttactcatatatcaatacggctacctctttactttgtagtatatcaatacatgtacctatttgttatttctattttacatttatacaca 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28398464 tatctatatttttactcatatatcaatacggctacctctttactc----gtatatcaatacatgtacctattttttatttctattttacatttatacaca 28398559  T
Q  253 tgtctatatttttattcatatatcaacatgaattcctaattttattaaattatacatgtgttctactggtcttgttgtcttgatttatttctaacacaat 352  Q
    |||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28398560 tgtctatatttttagtcatatatcaacatggattcctaattttgttaaattatacatgtgttctactg-tcttgttgtcttgatttatttctaacacaat 28398658  T
Q  353 gaaaaagatttatctgaacaaagaaaattaaatatcatgttcatgctaacatttgtgatttatgcaggttggcaagataaaaaagttggagcttgaaact 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28398659 gaaaaagatttatctgaacaaagaaaattaaatatcatgttcatgctaacacttgtgatttatgcaggttggcaagataaaaaagttggagcttgaaact 28398758  T
Q  453 cgatatcatgagaatgaagagagaaattgattgatgacaacagttatatt 502  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28398759 agatatcatgagaatgaagagagaaattgattgatgacaacagttatatt 28398808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 153 - 498
Target Start/End: Original strand, 28390634 - 28390979
Alignment:
Q  153 tatctatatttttactcatatatcaatacggctacctctttactttgtagtatatcaatacatgtacctatttgtt-atttctatttta--catttatac 249  Q
    ||||||||||||||||||||||||||||||| ||||||||||||   || ||||||||||||||||| ||||| || |||| ||||||   |||||||||    
T  28390634 tatctatatttttactcatatatcaatacggttacctctttactca-ta-tatatcaatacatgtacttatttttttatttttatttttttcatttatac 28390731  T
Q  250 acatgtctatattttt-attcatatatcaacatgaattcctaattttattaaattatacatgtgttctactggtcttgttgtcttgatttatttctaaca 348  Q
    || ||||||||||||| | |||||||||||||||||||||||||||| ||||  |||||| |||||||| || |||||||||||||||||||||| ||||    
T  28390732 acgtgtctatattttttagtcatatatcaacatgaattcctaattttgttaagctatacacgtgttctattgttcttgttgtcttgatttatttccaaca 28390831  T
Q  349 caatgaaaaagatttatctgaacaaagaaaattaaatatcatgttcatgctaacatttgtgatttatgcaggttggcaagataaaaaagttggagcttga 448  Q
    |||||||||||||||||| ||||  |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||    
T  28390832 caatgaaaaagatttatccgaacccagaaaattaaatatcatgttcatgctaacacttgtgatttatgcattttggcaagataaaaaagttggagcttga 28390931  T
Q  449 aactcgatatcatgagaatgaagagagaaattgattgatgacaacagtta 498  Q
    |||| ||||||||| |||||  ||||||||||| || |||||||||||||    
T  28390932 aactagatatcatgggaatg--gagagaaattgcttcatgacaacagtta 28390979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 28398248 - 28398397
Alignment:
Q  30 atatttgtgagtgataaatataaataaaaaa-tacgagacaaatatttgtgagtgatatggatattcttacattttttcagcatctatcaatatggtgac 128  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||| ||||||    
T  28398248 atatttgtgagtgataaatataaataaaaaaatacgagacaaatatttgtgagtgat--gaatattcttacattttttcagcatctatcaataaggtgac 28398345  T
Q  129 atatttttctgtaatttatacacatatctatatttttactcatatatcaata 180  Q
    ||| |||| |||||||||||||    ||||||||||||||||||||||||||    
T  28398346 ataattttttgtaatttatacatgcgtctatatttttactcatatatcaata 28398397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 28390398 - 28390540
Alignment:
Q  32 atttgtgagtgataaatataaataaaaaatacgagacaaatatttgtgagtgatatggatattcttacattttttca-gcatctatcaatatggtgacat 130  Q
    ||||||| ||||||||||||||| ||| ||||| ||| ||||||||||||||||  ||| ||||||||||||||| | |||| |||||||||||||||||    
T  28390398 atttgtgggtgataaatataaatcaaatatacgggaccaatatttgtgagtgat--ggacattcttacatttttttatgcatatatcaatatggtgacat 28390495  T
Q  131 atttttctgtaatttatacacatatctatatttttactcatatat 175  Q
    |||||||||||||| ||| | | ||||||||||||||||||||||    
T  28390496 atttttctgtaattcatatatacatctatatttttactcatatat 28390540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 30485723 - 30485686
Alignment:
Q  143 tttatacacatatctatatttttactcatatatcaata 180  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  30485723 tttatacatatatctatatttttattcatatatcaata 30485686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 11079726 - 11079762
Alignment:
Q  242 atttatacacatgtctatatttttattcatatatcaa 278  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  11079726 atttatacatatgtctatatttttattcaaatatcaa 11079762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 28398549 - 28398585
Alignment:
Q  142 atttatacacatatctatatttttactcatatatcaa 178  Q
    |||||||||||| |||||||||||| |||||||||||    
T  28398549 atttatacacatgtctatatttttagtcatatatcaa 28398585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 25735628 - 25735577
Alignment:
Q  129 atatttttctgtaatttatacacatatctatatttttactcatatatcaata 180  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  25735628 atatttttctgtaatttatacacgtatctatatttttactcatatattaata 25735577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 49906845 - 49906887
Alignment:
Q  236 ttttacatttatacacatgtctatatttttattcatatatcaa 278  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  49906845 ttttaaatttatacacttgtctatatttttattcatatatcaa 49906887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 25735504 - 25735471
Alignment:
Q  140 taatttatacacatatctatatttttactcatat 173  Q
    |||||||||||||| |||||||||||||||||||    
T  25735504 taatttatacacatgtctatatttttactcatat 25735471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 39721981 - 39722017
Alignment:
Q  138 tgtaatttatacacatatctatatttttactcatata 174  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  39721981 tgtaatttatatacatgtctatatttttactcatata 39722017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 39722098 - 39722130
Alignment:
Q  246 atacacatgtctatatttttattcatatatcaa 278  Q
    ||||||||| |||||||||||||||||||||||    
T  39722098 atacacatgcctatatttttattcatatatcaa 39722130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 49906850 - 49906890
Alignment:
Q  141 aatttatacacatatctatatttttactcatatatcaatac 181  Q
    ||||||||||| | |||||||||||| ||||||||||||||    
T  49906850 aatttatacacttgtctatatttttattcatatatcaatac 49906890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 24572117 - 24572075
Alignment:
Q  236 ttttacatttatacacatgtctatatttttattcatatatcaa 278  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  24572117 ttttccatttatacacatgtctatatttttattcatatatcaa 24572075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 35765493 - 35765451
Alignment:
Q  236 ttttacatttatacacatgtctatatttttattcatatatcaa 278  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  35765493 ttttaaatttatacacatgtctatatttttattcatatatcaa 35765451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 32743039 - 32742991
Alignment:
Q  132 tttttctgtaatttatacacatatctatatttttactcatatatcaata 180  Q
    ||||| |||||||||||||||| |||||| |||||||||||||| ||||    
T  32743039 tttttttgtaatttatacacatgtctatacttttactcatatattaata 32742991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 35765488 - 35765448
Alignment:
Q  141 aatttatacacatatctatatttttactcatatatcaatac 181  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  35765488 aatttatacacatgtctatatttttattcatatatcaatac 35765448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 24572111 - 24572072
Alignment:
Q  142 atttatacacatatctatatttttactcatatatcaatac 181  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  24572111 atttatacacatgtctatatttttattcatatatcaatac 24572072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 275
Target Start/End: Complemental strand, 13216768 - 13216735
Alignment:
Q  242 atttatacacatgtctatatttttattcatatat 275  Q
    |||||||||||||||||||||||||||| |||||    
T  13216768 atttatacacatgtctatatttttattcgtatat 13216735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 53840257 - 53840293
Alignment:
Q  242 atttatacacatgtctatatttttattcatatatcaa 278  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  53840257 atttatacacatgcctatattttaattcatatatcaa 53840293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 278
Target Start/End: Complemental strand, 72840 - 72804
Alignment:
Q  242 atttatacacatgtctatatttttattcatatatcaa 278  Q
    |||||||||||||||||||||||||||||||||||||    
T  72840 atttatacacatgtctatatttttattcatatatcaa 72804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 37044081 - 37044124
Alignment:
Q  132 tttttctgtaatttatacacatatctatatttttactcatatat 175  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  37044081 tttttttgtaatttatacacatgtctatatttttactcatatat 37044124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 72842 - 72801
Alignment:
Q  140 taatttatacacatatctatatttttactcatatatcaatac 181  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  72842 taatttatacacatgtctatatttttattcatatatcaatac 72801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 14976838 - 14976871
Alignment:
Q  242 atttatacacatgtctatatttttattcatatat 275  Q
    ||||||||||||||||||||||||||||||||||    
T  14976838 atttatacacatgtctatatttttattcatatat 14976871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 43488118 - 43488063
Alignment:
Q  30 atatttgtgagtgataaatataaataaaaaatacgagacaaatatttgtgagtgata 86  Q
    |||||||| | |||||||||||| ||||||||||| ||||||||||||| |||||||    
T  43488118 atatttgtcactgataaatataa-taaaaaatacgggacaaatatttgttagtgata 43488063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 37044091 - 37044124
Alignment:
Q  242 atttatacacatgtctatatttttattcatatat 275  Q
    ||||||||||||||||||||||||| ||||||||    
T  37044091 atttatacacatgtctatatttttactcatatat 37044124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 37044154 - 37044187
Alignment:
Q  140 taatttatacacatatctatatttttactcatat 173  Q
    |||||||||||||| |||||||||||||||||||    
T  37044154 taatttatacacatgtctatatttttactcatat 37044187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 13694133 - 13694198
Alignment:
Q  118 aatatggtgacatatttttctgtaatttatacacatatctatatttttactcatatatcaatacgg 183  Q
    ||||||| |||  |||||| | ||||| |||||||| |||||||||||| ||||||||||||||||    
T  13694133 aatatggggaccgatttttttttaattgatacacatgtctatatttttattcatatatcaatacgg 13694198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 13694161 - 13694193
Alignment:
Q  246 atacacatgtctatatttttattcatatatcaa 278  Q
    |||||||||||||||||||||||||||||||||    
T  13694161 atacacatgtctatatttttattcatatatcaa 13694193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 25089836 - 25089876
Alignment:
Q  242 atttatacacatgtctatatttttattcatatatcaacatg 282  Q
    ||||||||| || |||||||||||| |||||||||||||||    
T  25089836 atttatacaaatctctatatttttactcatatatcaacatg 25089876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 25089836 - 25089872
Alignment:
Q  142 atttatacacatatctatatttttactcatatatcaa 178  Q
    ||||||||| || ||||||||||||||||||||||||    
T  25089836 atttatacaaatctctatatttttactcatatatcaa 25089872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 147234 - 147276
Alignment:
Q  253 tgtctatatttttattcatatatcaacatgaattcctaatttt 295  Q
    |||||||||||||||||||||||||||| || | |||||||||    
T  147234 tgtctatatttttattcatatatcaacacgagtacctaatttt 147276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 147559 - 147599
Alignment:
Q  142 atttatacacatatctatatttttactcatatatcaatacg 182  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  147559 atttatacatgtatctatatttttacttatatatcaatacg 147599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 29064926 - 29064877
Alignment:
Q  132 tttttctgtaatttatacacatatctatatttttactcatatatcaatac 181  Q
    ||||| |||||||| |||| || |||||||||||| ||||||||||||||    
T  29064926 tttttttgtaatttgtacatatgtctatatttttattcatatatcaatac 29064877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 29119780 - 29119731
Alignment:
Q  132 tttttctgtaatttatacacatatctatatttttactcatatatcaatac 181  Q
    ||||| |||||||| |||| || |||||||||||| ||||||||||||||    
T  29119780 tttttttgtaatttgtacatatgtctatatttttattcatatatcaatac 29119731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 6261239 - 6261275
Alignment:
Q  138 tgtaatttatacacatatctatatttttactcatata 174  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  6261239 tgtaatttatatacatgtctatatttttactcatata 6261275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 278
Target Start/End: Complemental strand, 29064916 - 29064880
Alignment:
Q  242 atttatacacatgtctatatttttattcatatatcaa 278  Q
    |||| |||| |||||||||||||||||||||||||||    
T  29064916 atttgtacatatgtctatatttttattcatatatcaa 29064880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 278
Target Start/End: Complemental strand, 29119770 - 29119734
Alignment:
Q  242 atttatacacatgtctatatttttattcatatatcaa 278  Q
    |||| |||| |||||||||||||||||||||||||||    
T  29119770 atttgtacatatgtctatatttttattcatatatcaa 29119734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 5467671 - 5467643
Alignment:
Q  250 acatgtctatatttttattcatatatcaa 278  Q
    |||||||||||||||||||||||||||||    
T  5467671 acatgtctatatttttattcatatatcaa 5467643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University