View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_high_14 (Length: 500)
Name: NF19379_high_14
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 16 - 500
Target Start/End: Complemental strand, 28088837 - 28088353
Alignment:
| Q |
16 |
atggtctggaggattcacgcgatcaggaacagggataccaatgccggcaaagtattcttctacnnnnnnnacaggtccgtgatatgcagtaaggccacct |
115 |
Q |
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| T |
28088837 |
atggtctggaggattcacgcgatcaggaacagggataccaatgccggcaaagtattcttctactttttttacaggtccgtgatatgcagtaaggccacct |
28088738 |
T |
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| Q |
116 |
tttgctagaaatattatatcatcaaacattctgaacaaagtatagctgtatcacaacgaaataaaaagtcagattttaactttatgttagaatgtttgaa |
215 |
Q |
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| T |
28088737 |
tttgctagaaatattatatcatcaaacattctgaacaaagtatagctgtatcacaacaaaataaaaagtcagattttaactttatgttagaatgtttgaa |
28088638 |
T |
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| Q |
216 |
gaacatttttattctatgcttaattactctggtgacattaccttggttgatgaagtaccatgcaaacatttaccccttcagcagcttcacgacgaagtgc |
315 |
Q |
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| T |
28088637 |
gaacatttttattctatgcttaattactctggtgacattaccttggttgatgaagtaccatgcaaacatttaccccttcagcagcttcacgacgaagtgc |
28088538 |
T |
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| Q |
316 |
tttcagcagtaaagaggaagatgcactgtccaaaccagttgtaggctcatctaagattaacaatgaaggctccataaccatctccaaccctacatttaca |
415 |
Q |
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| T |
28088537 |
tttcagcagtaaagaggaagatgcactgtccagaccagttgtaggctcatctaagattaacaatgaaggctccataaccatctccaaccctacatttaca |
28088438 |
T |
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| Q |
416 |
cgttttcgttgcccaccagatatgcctcgcctctctactgtcccaacaagggaatctcttattgcctggagtcccaaggtttcaa |
500 |
Q |
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| T |
28088437 |
cgttttcgttgtccaccagatatgcctcgcctctctactgtcccaacaagggaatctcttattgcctggagtcccaaggtttcaa |
28088353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 252 - 494
Target Start/End: Original strand, 41042139 - 41042381
Alignment:
| Q |
252 |
attaccttggttgatgaagtaccatgcaaacatttaccccttcagcagcttcacgacgaagtgctttcagcagtaaagaggaagatgcactgtccaaacc |
351 |
Q |
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||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||||| ||||| || |||||| |||||||| ||||||||||| |
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| T |
41042139 |
attaccttggttggtgaagtaccatgcatatgtttacaccttcaagagcttcacgacgaagcgctttaagaagtaaactagaagatgcgctgtccaaacc |
41042238 |
T |
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| Q |
352 |
agttgtaggctcatctaagattaacaatgaaggctccataaccatctccaaccctacatttacacgttttcgttgcccaccagatatgcctcgcctctct |
451 |
Q |
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| T |
41042239 |
agttgtaggctcatctaagattaataatgaaggttccatcaccatctctagtcctacatttacacgttttctttgccctccggatatgcctctcttctct |
41042338 |
T |
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| Q |
452 |
actgtcccaacaagggaatctcttattgcctggagtcccaagg |
494 |
Q |
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| T |
41042339 |
attgtcccaactagagaatcccttactggctgtagtcctaagg |
41042381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 41041866 - 41042009
Alignment:
| Q |
16 |
atggtctggaggattcacgcgatcaggaacagggataccaatgccggcaaagtattcttctacnnnnnnnacaggtccgtgatatgcagtaaggccacct |
115 |
Q |
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|||||| |||||||| |||||||| || |||||||| |||||||| | ||||||||||||||| || || || |||||||| ||||| |||||| |
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| T |
41041866 |
atggtccggaggattaacgcgatccggtacagggattccaatgccagaaaagtattcttctacttttttcactggaccatgatatgctgtaagaccacct |
41041965 |
T |
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| Q |
116 |
tttgctagaaatattatatcatcaaacattctgaacaaagtata |
159 |
Q |
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| T |
41041966 |
tttgctagaaatactatatcatcaaacattctaaacaaggtata |
41042009 |
T |
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