View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19379_high_16 (Length: 484)

Name: NF19379_high_16
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19379_high_16
NF19379_high_16
[»] chr1 (1 HSPs)
chr1 (19-465)||(9620847-9621292)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 9621292 - 9620847
Alignment:
Q  19 acatttcatccatgcatgtcttcacaaataaggataannnnnnn-atggggagtgatcataatatattcttaacaattttagtgctcattttgttattga 117  Q
    |||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  9621292 acatttcatccatgcatgtcttcacaaataaggagaattttttttatggggagtgatcataatatattcttaacaattttagtgatctttttgttattga 9621193  T
Q  118 tgttcactccactcataaaaaagaaaa---tatctattttaatgactatcatnnnnnnnnnnctaggttagttctgtcattggtcgaactgacgaaatct 214  Q
    | |||| ||||||||||||||| ||||   |||||||||  |||||||||||          ||||||||| | ||||||||  ||||| ||| ||||||    
T  9621192 tattcattccactcataaaaaaaaaaaaaatatctatttggatgactatcataaaaa-----ctaggttagctatgtcattgcccgaaccgacaaaatct 9621098  T
Q  215 ccaaatcataattcaatgtaaatcaccttaaaacgctcgaactaagtcgaagctatgatgattgattcaatactcaactagtagataacttatatgttag 314  Q
    |||||||||||||||||||||| |  |||||| ||||| |||  ||||||| |||||||| |||||||||   ||||||||| |||||||||||||||||    
T  9621097 ccaaatcataattcaatgtaaaccgtcttaaatcgctcaaaccgagtcgaaactatgatggttgattcaaggttcaactagttgataacttatatgttag 9620998  T
Q  315 gtcttttcactttcttcatttgataacttattattaaggaccctttacactttcatttcccccatattctccttcacaataattgtaaccctagctataa 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9620997 gtcttttcactttcttcatttgataacttattattaaggaccctttacactttcatttcccctatattctccttcacaataattgtaaccctagctataa 9620898  T
Q  415 tgacttgatcgatcctaataagcaagaagtgagtactccaagagtagtgcg 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9620897 tgacttgatcgatcctaataagcaagaagtgagtactccaagagtagtgcg 9620847  T

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